Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7a01
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         30   1.9  
SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8)                    29   4.5  
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   5.9  

>SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +2

Query: 488 NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKTDAAVNTSSPKRAVETENDDDDDE 667
           NG  D N++ F C E  +    M+F+   Y  D+   D     +  K      ND DDDE
Sbjct: 297 NGGADGNSV-FCCMEKNIAMIWMMFEDDCYDVDDGGGDGGFCCNKDKDDNNDNNDGDDDE 355


>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 572 IYRPDNNKTDAAVNT--SSPKRAVETENDDDDDE 667
           I +PD  K   AVN+  S PK+  + E D D DE
Sbjct: 124 IKKPDVQKRPLAVNSDKSPPKKVAKVEKDSDSDE 157


>SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8)
          Length = 367

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 578 RPDNNKTDAAVNTSSPKRAVETENDDDDDE 667
           +PD+ K  ++    +P++ ++ + DDDDD+
Sbjct: 93  KPDDPKQGSSAGAITPEQGIKRKADDDDDD 122


>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1125

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
 Frame = +2

Query: 503 LNAIMFNCAEIKLN-KGQMLFQTKIYRPDNNKTDAAVNTSSPK------RAVETENDDDD 661
           LNA  FN + +KL+ K       K+      +T A  N +  +      R  + +NDDDD
Sbjct: 541 LNAFHFNLSNLKLDVKPSQTTHEKLREAGGQETKAPDNDADGEEKAEDDRVADDDNDDDD 600

Query: 662 D 664
           D
Sbjct: 601 D 601


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,077,391
Number of Sequences: 59808
Number of extensions: 381202
Number of successful extensions: 1574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)