Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p08
         (640 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127507-1|BAC87013.1|  130|Homo sapiens protein ( Homo sapiens ...    32   1.5  
X89894-1|CAA61984.1|  443|Homo sapiens nuclear receptor protein.       31   2.6  
S81243-1|AAB36006.1|  684|Homo sapiens CHN protein.                    31   2.6  
D78579-1|BAA11419.1|  626|Homo sapiens neuron derived orphan rec...    31   2.6  
AL359710-3|CAI95139.1|  443|Homo sapiens nuclear receptor subfam...    31   2.6  
AL359710-2|CAI95138.1|  626|Homo sapiens nuclear receptor subfam...    31   2.6  
AL359710-1|CAM16648.1|  637|Homo sapiens nuclear receptor subfam...    31   2.6  
AL358937-4|CAI95320.1|  626|Homo sapiens nuclear receptor subfam...    31   2.6  
AL358937-3|CAM22558.1|  637|Homo sapiens nuclear receptor subfam...    31   2.6  
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio...    31   3.4  
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ...    31   3.4  
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio...    31   3.4  
AF086921-1|AAP97151.1|  526|Homo sapiens D-myo-inositol-3-phosph...    30   6.0  
EF036508-1|ABO65094.1|  149|Homo sapiens cleavage and polyadenyl...    30   8.0  
BC020211-1|AAH20211.1|  684|Homo sapiens cleavage and polyadenyl...    30   8.0  
BC011654-1|AAH11654.1|  684|Homo sapiens cleavage and polyadenyl...    30   8.0  
AK223487-1|BAD97207.1|  684|Homo sapiens cleavage and polyadenyl...    30   8.0  
AF171877-1|AAF00224.1|  684|Homo sapiens cleavage and polyadenyl...    30   8.0  
AC080162-3|AAY14858.1|  684|Homo sapiens unknown protein.              30   8.0  

>AK127507-1|BAC87013.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45600 fis, clone BRTHA3020369. ).
          Length = 130

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 466 CVGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQ 600
           C+G PF  S+    S P++S HP +   +H    Q P  + QPPQ
Sbjct: 87  CIG-PFS-SYLTSVSLPHSSIHPSIHPSIHPSFIQTPSGLSQPPQ 129


>X89894-1|CAA61984.1|  443|Homo sapiens nuclear receptor protein.
          Length = 443

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>S81243-1|AAB36006.1|  684|Homo sapiens CHN protein.
          Length = 684

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 93  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144


>D78579-1|BAA11419.1|  626|Homo sapiens neuron derived orphan
           receptor protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL359710-3|CAI95139.1|  443|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 443

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL359710-2|CAI95138.1|  626|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL359710-1|CAM16648.1|  637|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 637

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 46  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97


>AL358937-4|CAI95320.1|  626|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL358937-3|CAM22558.1|  637|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 637

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 46  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97


>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
           regulator 1 protein.
          Length = 1077

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +3

Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 635
           P+PA+S TST SS P   T TT   TS++    TP
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTP 299


>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
           factor CA150 protein.
          Length = 1098

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +3

Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 635
           P+PA+S TST SS P   T TT   TS++    TP
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTP 299


>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
           regulator 1 variant protein.
          Length = 1081

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +3

Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 635
           P+PA+S TST SS P   T TT   TS++    TP
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTP 303


>AF086921-1|AAP97151.1|  526|Homo sapiens D-myo-inositol-3-phosphate
           synthase protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -2

Query: 462 PPSTVTSAVVQQRSTVTGILR--LGAEGKTTASRLTRYASR*PFMME 328
           P S V +A+ +QRS +  ILR  +G+  +TT S  T+++++ P   E
Sbjct: 470 PGSPVVNALFRQRSCIENILRACVGSRHRTTCSWNTKWSAQGPASSE 516


>EF036508-1|ABO65094.1|  149|Homo sapiens cleavage and
           polyadenylation specific factor 3 protein.
          Length = 149

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -2

Query: 474 ANTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS-RLTRYASR*PFMMEETFGSDCTVT 298
           +N +   TVT+ +++ +S     +R GA  K +    +  Y+ R   M+++ FG DC   
Sbjct: 37  SNDMYADTVTTVILEVQSNPK--IRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSV 94

Query: 297 LFD-LVSVPVRSK 262
             D ++SV V  K
Sbjct: 95  KDDSILSVTVDGK 107


>BC020211-1|AAH20211.1|  684|Homo sapiens cleavage and
           polyadenylation specific factor 3, 73kDa protein.
          Length = 684

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -2

Query: 474 ANTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS-RLTRYASR*PFMMEETFGSDCTVT 298
           +N +   TVT+ +++ +S     +R GA  K +    +  Y+ R   M+++ FG DC   
Sbjct: 572 SNDMYADTVTTVILEVQSNPK--IRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSV 629

Query: 297 LFD-LVSVPVRSK 262
             D ++SV V  K
Sbjct: 630 KDDSILSVTVDGK 642


>BC011654-1|AAH11654.1|  684|Homo sapiens cleavage and
           polyadenylation specific factor 3, 73kDa protein.
          Length = 684

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -2

Query: 474 ANTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS-RLTRYASR*PFMMEETFGSDCTVT 298
           +N +   TVT+ +++ +S     +R GA  K +    +  Y+ R   M+++ FG DC   
Sbjct: 572 SNDMYADTVTTVILEVQSNPK--IRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSV 629

Query: 297 LFD-LVSVPVRSK 262
             D ++SV V  K
Sbjct: 630 KDDSILSVTVDGK 642


>AK223487-1|BAD97207.1|  684|Homo sapiens cleavage and
           polyadenylation specific factor 3, 73kDa variant
           protein.
          Length = 684

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -2

Query: 474 ANTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS-RLTRYASR*PFMMEETFGSDCTVT 298
           +N +   TVT+ +++ +S     +R GA  K +    +  Y+ R   M+++ FG DC   
Sbjct: 572 SNDMYADTVTTVILEVQSNPK--IRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSV 629

Query: 297 LFD-LVSVPVRSK 262
             D ++SV V  K
Sbjct: 630 KDDSILSVTVDGK 642


>AF171877-1|AAF00224.1|  684|Homo sapiens cleavage and
           polyadenylation specificity factor 73 kDa subunit
           protein.
          Length = 684

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -2

Query: 474 ANTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS-RLTRYASR*PFMMEETFGSDCTVT 298
           +N +   TVT+ +++ +S     +R GA  K +    +  Y+ R   M+++ FG DC   
Sbjct: 572 SNDMYADTVTTVILEVQSNPK--IRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSV 629

Query: 297 LFD-LVSVPVRSK 262
             D ++SV V  K
Sbjct: 630 KDDSILSVTVDGK 642


>AC080162-3|AAY14858.1|  684|Homo sapiens unknown protein.
          Length = 684

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -2

Query: 474 ANTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS-RLTRYASR*PFMMEETFGSDCTVT 298
           +N +   TVT+ +++ +S     +R GA  K +    +  Y+ R   M+++ FG DC   
Sbjct: 572 SNDMYADTVTTVILEVQSNPK--IRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSV 629

Query: 297 LFD-LVSVPVRSK 262
             D ++SV V  K
Sbjct: 630 KDDSILSVTVDGK 642


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,159,153
Number of Sequences: 237096
Number of extensions: 1759107
Number of successful extensions: 5522
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5514
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)