Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p04
         (319 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5FWH9 Cluster: ABC-2 type transporter; n=1; Acidiphili...    35   0.30 
UniRef50_A6ES16 Cluster: Putative uncharacterized protein; n=1; ...    33   1.2  
UniRef50_Q7NLY9 Cluster: Gll0980 protein; n=1; Gloeobacter viola...    32   2.1  
UniRef50_Q2S5H9 Cluster: Signal peptidase I; n=1; Salinibacter r...    31   3.8  
UniRef50_O23408 Cluster: SEN1 like protein; n=3; Arabidopsis tha...    31   6.6  
UniRef50_Q9NR50 Cluster: Translation initiation factor eIF-2B su...    30   8.7  

>UniRef50_A5FWH9 Cluster: ABC-2 type transporter; n=1; Acidiphilium
           cryptum JF-5|Rep: ABC-2 type transporter - Acidiphilium
           cryptum (strain JF-5)
          Length = 293

 Score = 35.1 bits (77), Expect = 0.30
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 252 NLITKSIIILWGLNFVVNIFAALTLRGLLYNIFKIPKTTLWM 127
           N++  +I++   L  +V +FA + +R  LY++  IP   LWM
Sbjct: 143 NVVRNTIVLAHNLIVIVVVFAIMDVRQSLYSLLAIPALALWM 184


>UniRef50_A6ES16 Cluster: Putative uncharacterized protein; n=1;
           unidentified eubacterium SCB49|Rep: Putative
           uncharacterized protein - unidentified eubacterium SCB49
          Length = 427

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -2

Query: 288 IINWNIPMSLLNNLITKSIIILWGLNFVVNIFAALTLRGLLYNIFKIP 145
           I NW +P+SL   LIT    + W  +FV      + L GL YN+ K+P
Sbjct: 204 IFNWFLPLSL---LITLGAFVQWDDSFV--FLTYIFLFGLFYNLGKLP 246


>UniRef50_Q7NLY9 Cluster: Gll0980 protein; n=1; Gloeobacter
           violaceus|Rep: Gll0980 protein - Gloeobacter violaceus
          Length = 804

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 261 LLNNLITKSIIILWGLNFVVNIFAALTLRGLL 166
           L+NN +    ++ WG+NF+VN+  +L  R L+
Sbjct: 95  LVNNFLLALTVLAWGVNFIVNLEISLLTRMLM 126


>UniRef50_Q2S5H9 Cluster: Signal peptidase I; n=1; Salinibacter
           ruber DSM 13855|Rep: Signal peptidase I - Salinibacter
           ruber (strain DSM 13855)
          Length = 392

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 240 KSIIILWGLNFVVNIFAALTLRGLLYNIFKIPKTTL 133
           KS +  WG + VV +   L +R LL+++F+IP  ++
Sbjct: 14  KSELRQWGESLVVAVVIVLIVRSLLFDLFRIPTPSM 49


>UniRef50_O23408 Cluster: SEN1 like protein; n=3; Arabidopsis
           thaliana|Rep: SEN1 like protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 555

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 258 LNNLITKSIIILWGLNFVVNIFAALTLRG 172
           +   I +   I+WG NF +N+FA L+  G
Sbjct: 187 IRTAILEEAAIVWGFNFRINVFATLSFSG 215


>UniRef50_Q9NR50 Cluster: Translation initiation factor eIF-2B
           subunit gamma; n=43; Euteleostomi|Rep: Translation
           initiation factor eIF-2B subunit gamma - Homo sapiens
           (Human)
          Length = 452

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 125 IIKNKFLSNHHTFE-HTKIIDLL*LEALKKYIVEFLYES 12
           +IK   L  H     HT ++D   L  LKKYIV+FL E+
Sbjct: 181 VIKGSILQKHPRIRFHTGLVDAH-LYCLKKYIVDFLMEN 218


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,500,286
Number of Sequences: 1657284
Number of extensions: 4561295
Number of successful extensions: 9974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9971
length of database: 575,637,011
effective HSP length: 82
effective length of database: 439,739,723
effective search space used: 10114013629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)