Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p04
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   1.6  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   2.1  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   3.7  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   3.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   3.7  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    24   6.4  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    24   6.4  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    24   6.4  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 13   DSYKNSTIYFFKASNYNKSIIFVCSKV*WFERNLFLIMHP*SSF 144
            D  KN  +     S+YNK    +  K+ W ER   +++    S+
Sbjct: 939  DELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELESY 982


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 318 FFFIW*EHYIIINWNIP-MSLLNNLITKSIIILWGLNFVVNIF 193
           F+  W  HY  +NW +P +S L       +I L  +N++++ +
Sbjct: 462 FWLSWSGHYSYVNWVVPALSGLATGCGILLIFLQCINYLIDAY 504


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 23  KIQQYIFLKLLIIINQLFLYAQKYD 97
           KI++ + + LLIII  LFL +  Y+
Sbjct: 281 KIRKVVIISLLIIIAGLFLISSIYE 305


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 216 LNFVVNIFAALTLRGLLYNIFKIPKTTLWM 127
           L F  +    +  R L+ ++FK+ KT +WM
Sbjct: 697 LTFYYHAKQRIDFRELVRDLFKVYKTRIWM 726


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 146  QKLLYGCIIKNKFLSNHHTFEHTKIIDLL*LEALKKYIVEFLYESIP 6
            +KLL+   I    +S    +E+ + ++ L    L   IV++LY+  P
Sbjct: 1097 KKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYP 1143


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 167 SIIYLRYQKLLYGCIIKNKFLSNHHTFEHTKIIDL 63
           S+ ++RY  L+ G I+  K L   H  +H K  D+
Sbjct: 205 SVTWVRYFLLMGGHIVLAKILQAIHEKKHLKSPDI 239


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 279 WNIPMSLLNNLITKSIIILWGLNFVVNIFAALTLRGLLYNIF 154
           WN P ++ +++   S     GL+ +  I   + L    YNI+
Sbjct: 194 WNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIY 235


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 177 RGLLYNIFKIPKTTLW 130
           RGL Y  +K P+T  W
Sbjct: 99  RGLYYGSYKYPRTMTW 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,038
Number of Sequences: 5004
Number of extensions: 22145
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)