Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p04
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018...    26   5.6  
01_05_0336 - 21111048-21111800                                         26   5.6  
04_03_0598 - 17826167-17826213,17826691-17826837,17827793-17828744     26   7.4  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     25   9.7  

>04_04_1534 +
           34200538-34200589,34200677-34200857,34201701-34201842,
           34201963-34202032,34202169-34202302
          Length = 192

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 309 IW*EHYIIINWNIPMSLLNNLITKSIIILWGLNFVVNIFAALTL 178
           +W    + +  +I +    ++  K I+ILW ++++  +F  LTL
Sbjct: 102 VWINKVLAVGHDIAIKRDRSVFIKVILILWVVSYIGMLFNFLTL 145


>01_05_0336 - 21111048-21111800
          Length = 250

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 237 SIIILWGLNFVVNIFAALTLRGLLYNIFKI 148
           +++  WG  F+V +  AL L+GL Y   ++
Sbjct: 16  TVLGAWGSPFLVRVRLALNLKGLSYEYVEV 45


>04_03_0598 - 17826167-17826213,17826691-17826837,17827793-17828744
          Length = 381

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 288 IINWNIPMSLLNNLITKSIIILWGLNF 208
           +++W++   LL + +    + LWGL F
Sbjct: 133 VVSWSLSPKLLEHSLDAFYLTLWGLRF 159


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 104  SNHHTFEHTKIID 66
            +NH+TFEHT II+
Sbjct: 1505 NNHNTFEHTYIIE 1517


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,310,989
Number of Sequences: 37544
Number of extensions: 95841
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)