Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p04
         (319 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    23   2.1  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   2.8  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    21   8.4  

>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 255 NNLITKSIIILWGL 214
           + LI KSI ILWG+
Sbjct: 173 DKLIRKSIFILWGI 186


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 291 IIINWNIPMSLLNNLITKSIIILW 220
           I++ WN P   L +  +  II +W
Sbjct: 68  ILVKWNEPYQKLASCDSSGIIFVW 91


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 38  IFLKLLIIINQLFLYAQKYD 97
           +F+ L I++N LF+    +D
Sbjct: 812 LFITLCIVVNTLFMALDHHD 831


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,133
Number of Sequences: 2352
Number of extensions: 4351
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 21181083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)