Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p04
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical pr...    29   0.73 
Z75549-8|CAD60424.1|  297|Caenorhabditis elegans Hypothetical pr...    29   0.96 
Z69787-2|CAA93635.2|  474|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z71185-1|CAA94903.1|  290|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical pr...    26   6.8  
AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical ...    26   6.8  
Z70286-7|CAA94292.3|  431|Caenorhabditis elegans Hypothetical pr...    25   8.9  
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    25   8.9  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    25   8.9  

>U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical
           protein C30B5.5 protein.
          Length = 790

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 273 IPMSLLNNLITKSIIILWGLNFVVNIFAALTLRGLLYN 160
           +P ++ +N I + +  LW  NFV+  F  LTL  LL+N
Sbjct: 166 LPSAMASNPIYQQVYSLWVTNFVMVFFPFLTL--LLFN 201


>Z75549-8|CAD60424.1|  297|Caenorhabditis elegans Hypothetical
           protein T19C4.9 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 294 YIIINWNIPMSLLNNLITKSIIILWGLNFVVNIFAALTLRGL 169
           Y+++  N+P + + N++  S+ IL  L+ + N  + + LR L
Sbjct: 163 YVLVTPNLPFNDIYNILIPSLCILTVLSILFNAASVIFLRSL 204


>Z69787-2|CAA93635.2|  474|Caenorhabditis elegans Hypothetical
           protein C44C10.3 protein.
          Length = 474

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 198 IFAALTLRGLLYNIFKIPKTTLWMHNQ 118
           + AA  +  LL  IF IP++ +W+H++
Sbjct: 202 VCAACLVPALLMLIFLIPESAIWLHSK 228


>Z71185-1|CAA94903.1|  290|Caenorhabditis elegans Hypothetical
           protein C35A5.1 protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 273 IPMSLLNNLITKSIIILWGLNFVVNIFAALTLRGLLYN 160
           I M+++NN  +++   + G+  +VNIFA  ++ G   N
Sbjct: 195 ILMNVVNNEPSEATPFIIGMMVIVNIFATASITGTAMN 232


>Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -2

Query: 282 NWNIPMSLLNNLITKSIIILWGLNFVVNIFAALTLRGLLYNIFKIPKTTLWMHNQ 118
           NW +   L+  LI  ++   W ++ +    AAL    L+  +F  P++  W+HN+
Sbjct: 177 NWGVAR-LMMTLIAMALPE-WRMSSIACAVAALP--ALIIIVFVFPESPTWLHNK 227


>AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -2

Query: 282 NWNIPMSLLNNLITKSIIILWGLNFVVNIFAALTLRGLLYNIFKIPKTTLWMHNQ 118
           NW +   L+  LI  ++   W ++ +    AAL    L+  +F  P++  W+HN+
Sbjct: 177 NWGVAR-LMMTLIAMALPE-WRMSSIACAVAALP--ALIIIVFVFPESPTWLHNK 227


>Z70286-7|CAA94292.3|  431|Caenorhabditis elegans Hypothetical
           protein K08C7.1 protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 273 IPMSLLNNLITKSIIILWGLNFVVNIFAAL 184
           IP+  LN L T+++ IL+G   +V I AAL
Sbjct: 64  IPLHFLNFLGTRNVTILYG---IVGIIAAL 90


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 201 NIFAALTLRGLLYNIFKIPKTTLWMHNQK*ISFKPSYF*AYKN 73
           N+++ L  R +++++  +  T +WMH    +S     F  Y+N
Sbjct: 258 NMYSELVGRSMVHDVAVLSNTEMWMHKTN-LSVTEICFPEYQN 299


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 201 NIFAALTLRGLLYNIFKIPKTTLWMHNQK*ISFKPSYF*AYKN 73
           N+++ L  R +++++  +  T +WMH    +S     F  Y+N
Sbjct: 213 NMYSELVGRSMVHDVAVLSNTEMWMHKTN-LSVTEICFPEYQN 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,449,805
Number of Sequences: 27780
Number of extensions: 113853
Number of successful extensions: 252
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)