Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p03
         (145 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O10372 Cluster: Occlusion-derived virus envelope protei...    34   0.53 
UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:...    32   2.1  
UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep: ...    30   8.6  
UniRef50_A4XK97 Cluster: Glycosyl transferase, group 1; n=1; Cal...    30   8.6  
UniRef50_Q7RDH7 Cluster: Asparagine-rich protein; n=2; Plasmodiu...    30   8.6  

>UniRef50_O10372 Cluster: Occlusion-derived virus envelope protein
           E27; n=12; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E27 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 297

 Score = 34.3 bits (75), Expect = 0.53
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +2

Query: 8   STKTSNLLLSKFKFTIEDFDKINSNSVT 91
           + K  NLLLSKF+FT+E+ DK +S + +
Sbjct: 261 NAKMHNLLLSKFRFTVEESDKTSSGTTS 288


>UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:
           Odv-e27 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 284

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 20  SNLLLSKFKFTIEDFDKI 73
           +NLL+SKFKFTIED D +
Sbjct: 254 NNLLMSKFKFTIEDHDNL 271


>UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep:
           Orf13 - Trichoplusia ni SNPV
          Length = 296

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 2   TMSTKTSNLLLSKFKFTIEDFDKINSNS 85
           +++   +NLLLSKFKFT+E+ +   S S
Sbjct: 245 SLNVNFANLLLSKFKFTVEESEGNRSKS 272


>UniRef50_A4XK97 Cluster: Glycosyl transferase, group 1; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           Glycosyl transferase, group 1 - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 374

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
 Frame = -2

Query: 144 FFFILFNYLLKL------YILKPDVTEFEFILSKSSMVNLNLLNSKLDVF 13
           + + L NY+ KL       I+ PD +E EF+ +++  +N+NLL  +LD F
Sbjct: 21  YTYQLLNYIKKLDKQNEYLIIWPDKSEIEFVSAEN--ININLLPQQLDKF 68


>UniRef50_Q7RDH7 Cluster: Asparagine-rich protein; n=2; Plasmodium
           (Vinckeia)|Rep: Asparagine-rich protein - Plasmodium
           yoelii yoelii
          Length = 694

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 135 ILFNYLLKLYILKP-DVTEFEFILSKSSMVNLNLLNSKLDVFV 10
           I+F Y  KL +LKP D++   FIL K  + N N+ N  +D  +
Sbjct: 418 IIFTYENKLELLKPCDLSFSLFILQKFLISNNNIFNKIIDYII 460


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,453,426
Number of Sequences: 1657284
Number of extensions: 668108
Number of successful extensions: 3153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3152
length of database: 575,637,011
effective HSP length: 28
effective length of database: 529,233,059
effective search space used: 10055428121
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)