Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p03
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   1.8  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    23   5.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    23   5.5  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    23   7.3  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    23   7.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    22   9.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    22   9.6  

>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 114 KLYILKPDVTEFEFILSKSSMVNLNLLNSKLD 19
           KL++ K  ++E + I  ++   N N  NSKL+
Sbjct: 46  KLFLTKTPISELDRIAGEAIPSNSNSTNSKLE 77


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 135 ILFNYLLKLYILKPDVTEFEFILSKSSMVNLNLLNSKLD 19
           + F+ +LK Y +  D   F+ +LS  +  N+N   S L+
Sbjct: 296 VFFSAILKFYAVGGDFQGFKKLLSFMTDYNVNFSVSTLN 334


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 81  FEFILSKSSMVNLNLLNSKLDVFV 10
           F+F+ S    + LNLLN +L + V
Sbjct: 610 FQFLFSPMDDILLNLLNKQLGIEV 633


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 84  EFEFILSKSSMVNLNLLN 31
           E EF + KSS +NL+ L+
Sbjct: 108 EIEFSIQKSSKINLHTLS 125


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 117 LKLYILKPDVTEFEFILSKSSMVNLN 40
           +KL +LK +   F+F LS  +   +N
Sbjct: 138 MKLMVLKDNANNFDFSLSNITTEKMN 163


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 141  FFILFNYLLKLYIL 100
            FF+LFN +  +YIL
Sbjct: 1192 FFVLFNLVSMIYIL 1205


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 111 LYILKPDVTEFEFILSKSSMVNLNLLNSKLD 19
           +Y+ K  ++  E + SKS+ +N+N+ N + D
Sbjct: 494 IYLSKSSLSS-EVVTSKSTSLNINVPNEEGD 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,903
Number of Sequences: 5004
Number of extensions: 3328
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)