Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p03
         (145 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   1.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   1.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   1.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   3.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   4.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   4.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    19   5.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    18   9.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    18   9.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 144 FFFILFNYLLKLYILKP 94
           FF ++F Y++ L  L P
Sbjct: 413 FFIVIFTYIIILITLVP 429


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 91  CYRI*IYFVKIF 56
           CY I +YFV +F
Sbjct: 219 CYGIWVYFVPLF 230


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 91  CYRI*IYFVKIF 56
           CY I +YFV +F
Sbjct: 95  CYGIWVYFVPLF 106


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 141 FFILFNYLLKLYILKPDVTEFEFILSKS 58
           FFI+    +++ I +PD  E ++I + S
Sbjct: 257 FFIISRGQVRVTIKQPDTPEEKYIRTLS 284


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 126 NYLLKLYILKPDVTEFEFILSKSSMVNL 43
           NY L+L ++K   +E    + K + VN+
Sbjct: 6   NYALELLVVKTFDSETWEAIKKDAAVNM 33


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 126 NYLLKLYILKPDVTEFEFILSKSSMVNL 43
           NY L+L ++K   +E    + K + VN+
Sbjct: 6   NYALELLVVKTFDSETWEAIKKDAAVNM 33


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 138 FILFNYLLKLY 106
           FIL NY + LY
Sbjct: 16  FILINYFIFLY 26


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 138 FILFNYLLKLYILKPDVTEFEFILSKS 58
           F+LF++L     L+P      +I+ +S
Sbjct: 23  FVLFSFLRTRTKLQPTYFHHTYIIYES 49


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 138 FILFNYLLKLYILKPDVTEFEFILSKS 58
           F+LF++L     L+P      +I+ +S
Sbjct: 23  FVLFSFLRTRTKLQPTYFHHTYIIYES 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,574
Number of Sequences: 438
Number of extensions: 176
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 28
effective length of database: 134,079
effective search space used:  2547501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)