Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p02
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.6  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   6.6  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    24   8.7  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    24   8.7  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    24   8.7  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    24   8.7  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    24   8.7  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 165 NPHVTKFASPSPLKTFTPAYQEFVCSSAPESDDSLKYALWIKAYFPCFPE*ERTP 1
           N  V+ +AS   LK     ++E++        +S KY+  +K+Y+ C P  E  P
Sbjct: 652 NSVVSPYASGLTLKNLIYPFEEYILQ------ESNKYSSNLKSYYGCIPNIEFPP 700


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 277 QSYLLGMGNAAATRQSHAALIYITTNLYRLKPLWSG 170
           Q ++  +G+A    + H  + YIT  L  L+ LW G
Sbjct: 173 QIHVKQIGHARLILEPHNEVYYITFPLVTLEGLWYG 208


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 24  SKESMPLSTRHTLSYHRTRAPKSRQTLDK 110
           +KE +PL++++T   H T +  +R+ L++
Sbjct: 70  NKEGVPLASKNTNVRHTTASVSTRRALEE 98


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 120 FTPAYQEFVCSSAPESDDSLKYALWIKAYFPCF 22
           F PAY   V S    S D L+Y L  K    C+
Sbjct: 101 FNPAYLGIVNSGTQWSTDELRYFLCKKESDSCY 133


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 94  DKLLISRGKCLEWGR 138
           D+L+++  +C EWGR
Sbjct: 209 DRLMVALSECNEWGR 223


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 190 VYTDWW*CISKLHAIGESP 246
           VY D   CIS LHA G+ P
Sbjct: 83  VYKDGTVCISILHAPGDDP 101


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 122 VLSGEGDANLVTWGFTA*PKR 184
           +LSG  DA+L+ W  ++ P R
Sbjct: 147 LLSGSTDASLIVWDVSSQPSR 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,427
Number of Sequences: 5004
Number of extensions: 33281
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)