Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p02
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1138 - 9429447-9433868                                           28   3.7  
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139...    28   3.7  
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254...    27   6.5  
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605...    27   8.6  
05_01_0301 - 2356880-2357959                                           27   8.6  
04_03_0700 - 18836757-18837329                                         27   8.6  

>06_01_1138 - 9429447-9433868
          Length = 1473

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 367 SDEEGMRRFPQSLREHRMRPGGNA*GPLLQ 278
           SDEE M+   + L+EH   P G A  PL++
Sbjct: 386 SDEEIMQEAVEMLKEHMEAPAGKAAEPLIR 415


>01_06_1745 -
           39609894-39610030,39610127-39610223,39613856-39613996,
           39614094-39614272,39615067-39615111,39615802-39615858,
           39615935-39616163,39616348-39616418,39619527-39619635
          Length = 354

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 174 QAVNPHVTKFASPSPLKTFTPAYQ-EFVCSS 85
           Q  NPH  K A  +P+K  TP     +VC+S
Sbjct: 321 QVTNPHPAKQAKRTPIKNDTPKRSASYVCNS 351


>11_01_0342 +
           2548147-2548275,2548385-2548425,2548521-2548570,
           2548830-2548974,2549854-2549859,2550122-2550245,
           2550422-2550877,2550960-2551013
          Length = 334

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 285 FFSSPTS*AWAMLRRLANRMQL*YTLPPICIDSNRFGQAVNPHVTKFASPSPLKTFTPAY 106
           FF+ P+S + +M+   ++ M     L P    + R      P +  F  P+P  + TP+Y
Sbjct: 239 FFTPPSSSSTSMVPPASSMMPTAPPLHPTSASAQRATYGT-PLLQPFPPPTPPPSLTPSY 297

Query: 105 QE 100
            E
Sbjct: 298 NE 299


>08_02_1340 -
           26256768-26256999,26258105-26258774,26259273-26260555,
           26262403-26263499
          Length = 1093

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 250 AAATRQSHAALIYITTNLYRLKPLWSGGESPCNQIRVAFPTQDIYPGLSR 101
           AAA R S A +I++  +LY L     G + PC    +AF  +   PG  R
Sbjct: 18  AAACRPSMAQVIFVYVSLY-LVAFAQGFDKPCG---LAFGAEQFDPGHPR 63


>05_01_0301 - 2356880-2357959
          Length = 359

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 359 RRNEEIPSKSQRAPNATGRQRVRSASSA 276
           RR+  +PS S  +P A+ R  V SASS+
Sbjct: 146 RRSAVMPSSSSSSPGASHRWHVYSASSS 173


>04_03_0700 - 18836757-18837329
          Length = 190

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 341 PSKSQRAPNATGRQRVRSASSAVLPPRHGQCCGD 240
           P    RA  + GR+R+R A   V PP  G+ CG+
Sbjct: 54  PGSESRAKTSAGRRRIRGA-QRVWPP-IGEKCGN 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,022,376
Number of Sequences: 37544
Number of extensions: 272520
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)