Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p02
         (431 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY438664-1|AAR05447.1| 1203|Homo sapiens patched homolog 2 (Dros...    29   6.8  
AY359016-1|AAQ89375.1| 1203|Homo sapiens Patched 2 protein.            29   6.8  
AY358555-1|AAQ88919.1| 1211|Homo sapiens Patched 2 protein.            29   6.8  
AL592166-5|CAI13000.1| 1203|Homo sapiens patched homolog 2 (Dros...    29   6.8  
AL136380-1|CAI23127.1| 1203|Homo sapiens patched homolog 2 (Dros...    29   6.8  
AF119569-1|AAD17260.1| 1146|Homo sapiens patched 2 protein.            29   6.8  
AF091501-1|AAC79847.1| 1203|Homo sapiens receptor protein patche...    29   6.8  
AF087651-1|AAD25953.1| 1203|Homo sapiens patched 2 protein.            29   6.8  
U32499-1|AAA73929.1|  400|Homo sapiens d3 dopamine receptor prot...    29   9.0  
U25441-1|AAB08750.1|  399|Homo sapiens dopamine D3 receptor prot...    29   9.0  
L20469-1|AAA03543.1|  342|Homo sapiens dopamine D3 receptor prot...    29   9.0  
BC128123-1|AAI28124.1|  400|Homo sapiens dopamine receptor D3 pr...    29   9.0  
BC095510-1|AAH95510.1|  400|Homo sapiens dopamine receptor D3 pr...    29   9.0  
BC000680-1|AAH00680.1|  287|Homo sapiens tRNA selenocysteine ass...    29   9.0  
AL513497-3|CAI22288.1|  287|Homo sapiens tRNA selenocysteine ass...    29   9.0  
AK000510-1|BAA91217.1|  287|Homo sapiens protein ( Homo sapiens ...    29   9.0  

>AY438664-1|AAR05447.1| 1203|Homo sapiens patched homolog 2
           (Drosophila) protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 PLKTFTPAYQEFVCSSAPES-DDSLKYALWIKAYF 31
           PL+   P+Y     ++AP+    SLK  LW++AYF
Sbjct: 6   PLRELPPSYTPPARTAAPQILAGSLKAPLWLRAYF 40


>AY359016-1|AAQ89375.1| 1203|Homo sapiens Patched 2 protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 PLKTFTPAYQEFVCSSAPES-DDSLKYALWIKAYF 31
           PL+   P+Y     ++AP+    SLK  LW++AYF
Sbjct: 6   PLRELPPSYTPPARTAAPQILAGSLKAPLWLRAYF 40


>AY358555-1|AAQ88919.1| 1211|Homo sapiens Patched 2 protein.
          Length = 1211

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 PLKTFTPAYQEFVCSSAPES-DDSLKYALWIKAYF 31
           PL+   P+Y     ++AP+    SLK  LW++AYF
Sbjct: 6   PLRELPPSYTPPARTAAPQILAGSLKAPLWLRAYF 40


>AL592166-5|CAI13000.1| 1203|Homo sapiens patched homolog 2
           (Drosophila) protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 PLKTFTPAYQEFVCSSAPES-DDSLKYALWIKAYF 31
           PL+   P+Y     ++AP+    SLK  LW++AYF
Sbjct: 6   PLRELPPSYTPPARTAAPQILAGSLKAPLWLRAYF 40


>AL136380-1|CAI23127.1| 1203|Homo sapiens patched homolog 2
           (Drosophila) protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 PLKTFTPAYQEFVCSSAPES-DDSLKYALWIKAYF 31
           PL+   P+Y     ++AP+    SLK  LW++AYF
Sbjct: 6   PLRELPPSYTPPARTAAPQILAGSLKAPLWLRAYF 40


>AF119569-1|AAD17260.1| 1146|Homo sapiens patched 2 protein.
          Length = 1146

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 PLKTFTPAYQEFVCSSAPES-DDSLKYALWIKAYF 31
           PL+   P+Y     ++AP+    SLK  LW++AYF
Sbjct: 6   PLRELPPSYTPPARTAAPQILAGSLKAPLWLRAYF 40


>AF091501-1|AAC79847.1| 1203|Homo sapiens receptor protein patched 2
           protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 PLKTFTPAYQEFVCSSAPES-DDSLKYALWIKAYF 31
           PL+   P+Y     ++AP+    SLK  LW++AYF
Sbjct: 6   PLRELPPSYTPPARTAAPQILAGSLKAPLWLRAYF 40


>AF087651-1|AAD25953.1| 1203|Homo sapiens patched 2 protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 132 PLKTFTPAYQEFVCSSAPES-DDSLKYALWIKAYF 31
           PL+   P+Y     ++AP+    SLK  LW++AYF
Sbjct: 6   PLRELPPSYTPPARTAAPQILAGSLKAPLWLRAYF 40


>U32499-1|AAA73929.1|  400|Homo sapiens d3 dopamine receptor
           protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 223 ALIYITTNLYRLKPLWSGGESPCNQIRVAFPTQDIYP 113
           A IY+     R K + +   S CN +R  FP Q + P
Sbjct: 209 ARIYVVLKQRRRKRILTRQNSQCNSVRPGFPQQTLSP 245


>U25441-1|AAB08750.1|  399|Homo sapiens dopamine D3 receptor
           protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 223 ALIYITTNLYRLKPLWSGGESPCNQIRVAFPTQDIYP 113
           A IY+     R K + +   S CN +R  FP Q + P
Sbjct: 208 ARIYVVLKQRRRKRILTRQNSQCNSVRPGFPQQTLSP 244


>L20469-1|AAA03543.1|  342|Homo sapiens dopamine D3 receptor
           protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 223 ALIYITTNLYRLKPLWSGGESPCNQIRVAFPTQDIYP 113
           A IY+     R K + +   S CN +R  FP Q + P
Sbjct: 209 ARIYVVLKQRRRKRILTRQNSQCNSVRPGFPQQTLSP 245


>BC128123-1|AAI28124.1|  400|Homo sapiens dopamine receptor D3
           protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 223 ALIYITTNLYRLKPLWSGGESPCNQIRVAFPTQDIYP 113
           A IY+     R K + +   S CN +R  FP Q + P
Sbjct: 209 ARIYVVLKQRRRKRILTRQNSQCNSVRPGFPQQTLSP 245


>BC095510-1|AAH95510.1|  400|Homo sapiens dopamine receptor D3
           protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 223 ALIYITTNLYRLKPLWSGGESPCNQIRVAFPTQDIYP 113
           A IY+     R K + +   S CN +R  FP Q + P
Sbjct: 209 ARIYVVLKQRRRKRILTRQNSQCNSVRPGFPQQTLSP 245


>BC000680-1|AAH00680.1|  287|Homo sapiens tRNA selenocysteine
           associated protein 1 protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 117 TPAYQEFVCSSAPESDDSLKYALWIKAYFPC 25
           +P Y  FV    P+ DD + Y  ++K Y  C
Sbjct: 93  SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123


>AL513497-3|CAI22288.1|  287|Homo sapiens tRNA selenocysteine
           associated protein (SECP43) protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 117 TPAYQEFVCSSAPESDDSLKYALWIKAYFPC 25
           +P Y  FV    P+ DD + Y  ++K Y  C
Sbjct: 93  SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123


>AK000510-1|BAA91217.1|  287|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20503 fis, clone KAT09346. ).
          Length = 287

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 117 TPAYQEFVCSSAPESDDSLKYALWIKAYFPC 25
           +P Y  FV    P+ DD + Y  ++K Y  C
Sbjct: 93  SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,752,053
Number of Sequences: 237096
Number of extensions: 1293368
Number of successful extensions: 3068
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3063
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)