Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p02
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067936-6|AAC19214.1|  348|Caenorhabditis elegans Ground-like (...    29   1.4  
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    27   7.7  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    27   7.7  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    27   7.7  
AL021488-5|CAL49450.1|  408|Caenorhabditis elegans Hypothetical ...    27   7.7  
AL021488-4|CAA16363.2|  531|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      27   7.7  

>AF067936-6|AAC19214.1|  348|Caenorhabditis elegans Ground-like (grd
           related) protein 1 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 347 EIPSKSQRAPNATGRQRVRSASSAVLPPRHGQCCGDSPIACSF 219
           ++PS    AP  T RQ+  S    +LPP    CCG     C F
Sbjct: 205 QLPSAYVTAPPVTIRQQPLS----ILPPPINDCCGKCGAPCKF 243


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 266 EVGLLKKRTLRVAARSHSVLSET--LRESPHSFF 361
           E+GL +KR L+    SHS   +T  L+ +PH+F+
Sbjct: 674 ELGLYRKRLLKFLEVSHSYSPQTVLLQLAPHAFY 707


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 266 EVGLLKKRTLRVAARSHSVLSET--LRESPHSFF 361
           E+GL +KR L+    SHS   +T  L+ +PH+F+
Sbjct: 671 ELGLYRKRLLKFLEVSHSYSPQTVLLQLAPHAFY 704


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 250 HCPCLGGRTAEEADLTRCRPVAFGA 324
           HC C+ G+  +E     C+P  FG+
Sbjct: 560 HCKCVNGKCDKETGECTCQPGFFGS 584


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 250 HCPCLGGRTAEEADLTRCRPVAFGA 324
           HC C+ G+  +E     C+P  FG+
Sbjct: 560 HCKCVNGKCDKETGECTCQPGFFGS 584


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 250 HCPCLGGRTAEEADLTRCRPVAFGA 324
           HC C+ G+  +E     C+P  FG+
Sbjct: 560 HCKCVNGKCDKETGECTCQPGFFGS 584


>AL021488-5|CAL49450.1|  408|Caenorhabditis elegans Hypothetical
           protein Y45F10A.7b protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  GSKESMPLSTRHTLSYHRTRAPKSRQTL 104
           GSK + PL   H+ S H+     +RQTL
Sbjct: 277 GSKTTPPLRVYHSKSIHQEMRENARQTL 304


>AL021488-4|CAA16363.2|  531|Caenorhabditis elegans Hypothetical
           protein Y45F10A.7a protein.
          Length = 531

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  GSKESMPLSTRHTLSYHRTRAPKSRQTL 104
           GSK + PL   H+ S H+     +RQTL
Sbjct: 400 GSKTTPPLRVYHSKSIHQEMRENARQTL 427


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 250 HCPCLGGRTAEEADLTRCRPVAFGA 324
           HC C+ G+  +E     C+P  FG+
Sbjct: 560 HCKCVNGKCDKETGECTCQPGFFGS 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,462,613
Number of Sequences: 27780
Number of extensions: 198356
Number of successful extensions: 495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)