Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p02
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 348 GDSLKVSESTECDRAAT 298
           GDS KVS+  E  R +T
Sbjct: 709 GDSFKVSKHEEVSRTST 725


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 190 LKPLWSGGES 161
           L P+W GGES
Sbjct: 224 LPPVWVGGES 233


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = -1

Query: 338 SKSQRAPNATGRQRVRSASSAVLPPRHGQCCGDSPIACSFDIHYH 204
           ++   +P+ TG     S SSA   P         P   +   H+H
Sbjct: 56  AQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHH 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,606
Number of Sequences: 438
Number of extensions: 2590
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)