Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p01
         (358 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   0.71 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   1.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   1.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   5.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   8.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   8.7  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 0.71
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 75  CR*HHLLVLCGSSAGSGRGT 134
           CR + LLVL G+S+ S R T
Sbjct: 251 CRDNRLLVLAGTSSPSNRFT 270



 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 176 SSACGSIFDTRE 211
           SS CG +F+T E
Sbjct: 299 SSRCGQLFNTEE 310


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 98  PMWFLRWQRPRHP 136
           P WF+RW   + P
Sbjct: 18  PTWFVRWLNSQQP 30


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 132 CRGRCQRRNHI 100
           CRGR +RR+H+
Sbjct: 252 CRGRFRRRHHL 262


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 192 RSLTHGKTSSHIHTFSYLVAEPF 260
           R +T   TSS  HT S   ++ F
Sbjct: 381 REITRKSTSSSTHTSSQQTSDSF 403


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 LRLSSACGSIFDTREDILTYPYIQLP 244
           LRL++    I+ T      +P+IQLP
Sbjct: 71  LRLAATHLRIYQTLLSGKNHPHIQLP 96


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 170 RLSSACGSIFDTREDILTYPYIQLPGR 250
           R S    +++D RED     Y+Q   R
Sbjct: 160 RHSEIVETVYDPREDDRVVCYVQAAAR 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,118
Number of Sequences: 336
Number of extensions: 2110
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7193380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)