Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p01
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    27   0.65 
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   2.6  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   4.6  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    24   6.1  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    24   6.1  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    24   6.1  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    24   8.0  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    24   8.0  

>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 189 PQALDRRSPGRLVQRVLSGCRGRCQRRNHIGPISDVIGTA 70
           PQ + R+    L+ RVLS  + + +R NH     D I +A
Sbjct: 114 PQIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSA 153


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 138 TVHAVPTDPDSVYQVPAVRSLTHG 209
           T  A+P  PD    +P+ + +THG
Sbjct: 539 TKDAIPCHPDDKLMIPSPKIVTHG 562


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 119 QRPRHPDSTRCTNRPGLRLSSACGSIFDTREDILTYPY 232
           +RP HP+S   +N   LR SS    +   RE     PY
Sbjct: 96  RRPHHPNSIMGSNTGKLRASSFT-RLVSPREGFAQLPY 132


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 351 FVQNDLWCKLNK*KQNQHIEL 289
           F +ND WC   K +++ H+++
Sbjct: 55  FDENDFWCVCQKTRKHLHVKV 75


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 273 IGYKKIVLCADFVFI 317
           +G K+++LCAD +F+
Sbjct: 147 VGRKRLLLCADAIFV 161


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -2

Query: 240 N*MYGYVRMSSRVSKIEPQALDRRSPGRLVQRVLSGCRGRCQ 115
           N MY Y+ + SR+S   P    ++S  + +++ ++G + R +
Sbjct: 850 NFMYSYLDLISRISSNRPMNNVQQSTAKPIRKDINGQQRRSE 891


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 145 CTVRVPRPLPAEE 107
           C  R+P P+PAEE
Sbjct: 589 CVKRLPTPIPAEE 601


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 131 HPDSTRCTNRPGLRLSSAC 187
           HPD   C  +PG+ +   C
Sbjct: 5   HPDLVLCRRQPGITVGKLC 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,767
Number of Sequences: 5004
Number of extensions: 30763
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)