Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p01
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1013 - 7931756-7935109                                           32   0.12 
11_01_0517 - 4052825-4052884,4053043-4053120,4053784-4053881,405...    27   3.3  
03_02_0204 + 6385739-6385865,6386405-6386554,6386852-6386937,638...    27   4.3  
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644...    27   5.7  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     26   7.6  

>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = -1

Query: 145 CTVRVPRPLPAEEPHRTNK*CHRHRADDCNSTIISWCIC 29
           C  R  R LP    HR  K CH     DCN  I + C C
Sbjct: 313 CGQRCDRLLPCRR-HRCEKVCHTGPCGDCNVLISARCFC 350


>11_01_0517 -
           4052825-4052884,4053043-4053120,4053784-4053881,
           4054164-4054242,4054482-4054562
          Length = 131

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 128 RHPDSTRCTNRPGLRLSSACGSIFDTR 208
           R P S+R  + PGLR   A G + D+R
Sbjct: 23  RRPQSSRGDSAPGLRFWFAIGGVVDSR 49


>03_02_0204 +
           6385739-6385865,6386405-6386554,6386852-6386937,
           6387335-6387429,6387536-6387661,6387756-6387894
          Length = 240

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 125 PRHPDSTRCTNRPGLRLSSACGSIFDTREDILTYPYIQLPG 247
           P HP  TR  +  G+ +     + FD   D + YP+    G
Sbjct: 53  PSHPQGTRGRDARGMSVLQQHAAFFDRNGDGIIYPWETFQG 93


>04_01_0490 -
           6440176-6440448,6440785-6441074,6441156-6441304,
           6441432-6441890,6441973-6442269,6442604-6443502,
           6443793-6443827,6443984-6444078,6444184-6444247,
           6446099-6446175,6446330-6446514
          Length = 940

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +3

Query: 90  LLVLCGSSAGSGRGTLTVHAVPTDPDSVYQVPAVRSLTHGKTSSHIHTFSYLVAEP 257
           LL+L   +AG  RG  T  A P  PD      A+ +LT        H FS+ VA+P
Sbjct: 14  LLLLLLLAAGVARGQQTT-APPVVPD------ALNNLTRDVADYISHRFSFCVADP 62


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 96  VLCGSSAGSGRGTLTVHAVPTDPDSVYQVP-AVRSLTHGKTSSHIHT-FSYLVAEPFK*N 269
           V+  + AG+G     +HAV T   +   V  A+ +  H +    + + F  + AEP   N
Sbjct: 461 VVVPTGAGTGLALNNLHAVATTTSNGEPVQQAMVATNHQQQQQQLASPFVAMAAEPAARN 520

Query: 270 *IGYKKIVLCAD 305
            +  K +VLC +
Sbjct: 521 ELDDKLLVLCTE 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,363,517
Number of Sequences: 37544
Number of extensions: 211294
Number of successful extensions: 471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)