Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p01
         (358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40061-7|AAA81153.1|  357|Caenorhabditis elegans Unidentified vi...    30   0.55 
Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AF095788-1|AAD16125.1|  210|Caenorhabditis elegans BAG-family mo...    27   5.1  
AF039713-8|AAB96728.1|  210|Caenorhabditis elegans Bag1 (human) ...    27   5.1  

>U40061-7|AAA81153.1|  357|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 7 protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 102 IGPISDVIGTAQTIVIVQ*FHGVYVQMVFRFLN 4
           +G I DVIG   T++I    HGV V  V R +N
Sbjct: 135 VGTILDVIGVVLTLLITSVPHGVTVATVGRLIN 167


>Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical
           protein M153.5 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 146 RCTNRPGLRLSSACGSIFDTREDILTYPY 232
           RC N P   L   C S FD R  + +  Y
Sbjct: 68  RCANDPDFALIQCCSSCFDRRSSLSSEKY 96


>AF095788-1|AAD16125.1|  210|Caenorhabditis elegans BAG-family
           molecular chaperoneregulator-1 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 19  NHLNIYTMKLLYYYNRLRGADDIT 90
           N +++ TMKLL+    L+GADD++
Sbjct: 41  NDVDVETMKLLHRGKFLQGADDVS 64


>AF039713-8|AAB96728.1|  210|Caenorhabditis elegans Bag1 (human)
           homolog protein 1 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 19  NHLNIYTMKLLYYYNRLRGADDIT 90
           N +++ TMKLL+    L+GADD++
Sbjct: 41  NDVDVETMKLLHRGKFLQGADDVS 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,054,531
Number of Sequences: 27780
Number of extensions: 185809
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)