Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6p01
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   3.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   4.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   4.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    20   7.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 165 DSVYQVPAVRSLTHGKTSSHIH 230
           ++VY  P     T G   SHIH
Sbjct: 406 NNVYSTPGPHHHTMGHGHSHIH 427


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 144 VLSGCRGRCQR 112
           + S C GRCQR
Sbjct: 42  IFSRCDGRCQR 52


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 144 VLSGCRGRCQR 112
           + S C GRCQR
Sbjct: 42  IFSRCDGRCQR 52


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 16  KNHLNIYTMKLLYY 57
           KN+ N Y  K LYY
Sbjct: 312 KNYNNNYNSKKLYY 325


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 16  KNHLNIYTMKLLYY 57
           KN+ N Y  K LYY
Sbjct: 323 KNYNNNYNSKKLYY 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,956
Number of Sequences: 438
Number of extensions: 2279
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)