Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o17
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   2.7  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   6.2  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   6.2  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    24   8.2  

>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -1

Query: 262 FHSALSLAT*IQCGPATFLISSSQRVYGLPTRRLPIKPKARSAI 131
           F++A S  T +    A+F    S   Y  PTRRLP + K  SAI
Sbjct: 147 FNNASSYTTPMAPFTASFSNKVSHSAY--PTRRLPSQAKKTSAI 188


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 224 WSSNLSNIILPTRVRSADA 168
           W+SNL+ + +PT +R +DA
Sbjct: 129 WASNLNLLGIPTGLRDSDA 147


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 281 KGLLQRFPLCFVSGDINPVWSSNLSNI 201
           K LLQ FPL  VS  ++P  S +L N+
Sbjct: 655 KFLLQTFPLNEVSPSLDPRISKSLRNL 681


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 21/56 (37%), Positives = 25/56 (44%)
 Frame = -3

Query: 296 GPLSGKGLLQRFPLCFVSGDINPVWSSNLSNIILPTRVRSADAPLADKAKGPLRYN 129
           G + G G   R P+ F      PV S+   NI   T VRSA APL        RY+
Sbjct: 518 GFVQGSGNQNRRPISF------PVISNMQPNI---TNVRSASAPLCSSPVPSRRYS 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,837
Number of Sequences: 5004
Number of extensions: 33426
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)