Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o17
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447...    27   6.0  
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659...    27   6.0  
07_03_0773 - 21387606-21387878,21387965-21388121,21388202-213884...    27   8.0  
01_05_0017 - 17199365-17199757,17200040-17200156                       27   8.0  

>11_08_0023 +
           27741775-27742475,27744163-27744413,27744557-27744715,
           27744976-27745409,27745537-27746076
          Length = 694

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 72  GCHIFFYIVPSLLRIATTCDVLPL 1
           GCH+  YIVP+L   AT C V+ L
Sbjct: 359 GCHLPKYIVPTL---ATVCSVISL 379


>07_01_1146 + 10756897-10757065,10763869-10765521,10765638-10765900,
            10766057-10766266,10766818-10767036,10767379-10768344,
            10768575-10768670,10768772-10768870,10769349-10769538,
            10769623-10769855
          Length = 1365

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 137  GAGLWLYRQAARRQTVHALGG*Y*KGCWTTLDLCRQRQS-RVEIFGGGL 280
            G GLW   Q   + T  ALG  + KGC   LD  R  QS  + +  GGL
Sbjct: 1068 GQGLWTKVQ---QMTAFALGQLWPKGCEGLLDRIRVLQSDTLNLIQGGL 1113


>07_03_0773 -
           21387606-21387878,21387965-21388121,21388202-21388439,
           21388522-21388729,21390046-21390201,21390414-21391211
          Length = 609

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 293 PLSGKGLLQRFPLCFVSGDINPVWSSN 213
           PL+GKG     P C++  ++ P ++ N
Sbjct: 226 PLNGKGARVAGPRCYLRSELGPFYTGN 252


>01_05_0017 - 17199365-17199757,17200040-17200156
          Length = 169

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +1

Query: 193 GRMILERLLDHTGFMS----PETKQSGNLWRRPL 282
           GR+IL+R+L++T FM+    P++K S      PL
Sbjct: 91  GRLILDRILENTSFMTQSDEPQSKASVYKIEEPL 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,311,371
Number of Sequences: 37544
Number of extensions: 219477
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)