Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o17
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    31   0.34 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    31   0.34 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    30   0.78 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    30   0.78 
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    30   0.78 
U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    27   4.1  
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine r...    27   5.5  
U23173-1|AAC46708.1|  221|Caenorhabditis elegans Hypothetical pr...    27   7.2  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   7.2  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   7.2  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    27   7.2  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   7.2  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   7.2  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   7.2  
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    26   9.5  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
 Frame = +3

Query: 141 RAFGFIGKRRVGRPYTRWEDDIRK----------VAGPHWIYVARDKAEW 260
           R +G+  KR VGRP  RW D +RK          V  P W  +A+D+ EW
Sbjct: 834 RPYGW--KRPVGRPPMRWTDSLRKEITTRDADGEVITP-WSTIAKDRKEW 880


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
 Frame = +3

Query: 141 RAFGFIGKRRVGRPYTRWEDDIRK----------VAGPHWIYVARDKAEW 260
           R +G+  KR VGRP  RW D +RK          V  P W  +A+D+ EW
Sbjct: 360 RPYGW--KRPVGRPPMRWTDSLRKEITTRDADGEVITP-WSTIAKDRKEW 406


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
 Frame = +3

Query: 141  RAFGFIGKRRVGRPYTRWEDDIRK----------VAGPHWIYVARDKAEW 260
            R +G+  KR VGRP  RW D +RK          V  P W  +A+D+ +W
Sbjct: 1009 RPYGW--KRPVGRPPMRWTDSLRKEITTRDADGEVITP-WSTIAKDRKQW 1055


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
 Frame = +3

Query: 141 RAFGFIGKRRVGRPYTRWEDDIRK----------VAGPHWIYVARDKAEW 260
           R +G+  KR VGRP  RW D +RK          V  P W  +A+D+ +W
Sbjct: 748 RPYGW--KRPVGRPPMRWTDSLRKEITTRDADGEVITP-WSTIAKDRKQW 794


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
 Frame = +3

Query: 162 KRRVGRPYTRWEDDIRKVAGPH---------WIYVARDKAEWKSLEEA 278
           KR VGRP  RW D +RK              W   A+D+  WK++  A
Sbjct: 150 KRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWKAVIRA 197


>U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical
           protein C15H9.5 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 401 HTFVVVLFIINLLSLLFHAYTYFF 330
           H F+ VL  +  LS+ FH   Y+F
Sbjct: 291 HKFMAVLVFLKALSVFFHGLNYYF 314


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 395 FVVVLFIINLLSLLFHAYTYFFCTFSLYT 309
           F+++ FII  LS+LF  + ++F  + LY+
Sbjct: 2   FIIIAFII-ALSILFSQFVFYFNLYLLYS 29


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
 Frame = +3

Query: 162 KRRVGRPYTRWEDDIRK----------VAGPHWIYVARDKAEWKSL 269
           KR VG+P  RW D +RK          +  P W   A+D+  WK++
Sbjct: 14  KRPVGKPPMRWTDSLRKEITTRDMGNNIITP-WSTQAKDRKAWKAV 58


>Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical
           protein T04F8.4 protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 407 TWHTFVVVLFIINLLSLLFHAY 342
           T+ TF+ VLF+  +L +++H Y
Sbjct: 350 TFFTFIFVLFVTTILVVVYHRY 371


>AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein5 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 416 FFFTWHTFVVVLFIINLLSLLFHAYTYFFCTFSLYT*YMYGPLSGK 279
           F F    F++V+F++    +    +T        Y  Y++ PL GK
Sbjct: 146 FLFGKRIFIIVIFVLLCYGIYVSVFTQPIIFSPEYASYLFDPLIGK 191


>U23173-1|AAC46708.1|  221|Caenorhabditis elegans Hypothetical
           protein K07E1.1 protein.
          Length = 221

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 416 FFFTWHTFVVVLFIINLLSLLFHAYTYFFCTFSLY 312
           F    H    ++F  NL +L F     FFC FS++
Sbjct: 5   FILLTHDVQSLVFFYNLPNLTFLPIETFFCEFSIF 39


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 404 WHTFVVVLFIINLLSLLFHAY 342
           W  F V + II+LLS L H Y
Sbjct: 119 WSQFSVFISIIHLLSFLLHCY 139


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 404 WHTFVVVLFIINLLSLLFHAY 342
           W  F V + II+LLS L H Y
Sbjct: 119 WSQFSVFISIIHLLSFLLHCY 139


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 404 WHTFVVVLFIINLLSLLFHAY 342
           W  F V + II+LLS L H Y
Sbjct: 177 WSQFSVFISIIHLLSFLLHCY 197


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 404 WHTFVVVLFIINLLSLLFHAY 342
           W  F V + II+LLS L H Y
Sbjct: 177 WSQFSVFISIIHLLSFLLHCY 197


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 404 WHTFVVVLFIINLLSLLFHAY 342
           W  F V + II+LLS L H Y
Sbjct: 177 WSQFSVFISIIHLLSFLLHCY 197


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 404 WHTFVVVLFIINLLSLLFHAY 342
           W  F V + II+LLS L H Y
Sbjct: 149 WSQFSVFISIIHLLSFLLHCY 169


>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical protein
            R134.1 protein.
          Length = 1140

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 290  LSGKGLLQRFPLCFVSGDINPVWSSNLSNIILPTR--VRSADAPLA 159
            + GKG+++ F +   SGDI P  S+  +  +   R  VR+ D P A
Sbjct: 1063 IKGKGVMETFWVLGRSGDIEPSISNRSTPPVTQERFTVRAPDTPEA 1108


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = -3

Query: 401 HTFVVVLFIINLLSLLF--HAYTYFFCTFSLYT*YMYGPLSGKGLLQRFPLCFVSGDINP 228
           H F+ + F     S  F  H +  FF   + +  ++Y  LSG  +L R+  C+V+     
Sbjct: 270 HHFLSLSFAFTFYSQNFALHRWIVFF-NLTAHV-FLYAYLSGFKILNRWTPCWVA----- 322

Query: 227 VWSSNLSNIILP-TRVRSADAPLA 159
           V SS +  +ILP     SA A LA
Sbjct: 323 VCSSQMLQLILPFIATFSAAAKLA 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,574,525
Number of Sequences: 27780
Number of extensions: 185172
Number of successful extensions: 503
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)