Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o17
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   5.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   9.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   9.7  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            20   9.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 164 LADKAK--GPLRYNTRTFKYNGCY*MSKNLKVQAAISSSI 51
           + DK+K  G     +   KY GC   S+++ +Q+A+++++
Sbjct: 777 MGDKSKKQGSSAGTSSITKYTGCELTSESMPLQSALTAAV 816


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 164 LADKAK--GPLRYNTRTFKYNGCY*MSKNLKVQAAISSSI 51
           + DK+K  G     +   KY GC   S+++ +Q+A+++++
Sbjct: 867 MGDKSKKQGSSAGTSSITKYTGCELTSESMPLQSALTAAV 906


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 175  PTRRLPIKPKARSAITLEHLNTTDVI 98
            P RR P  P+  SA  L H    D I
Sbjct: 1697 PNRRCPPPPRMGSAEGLSHRGMEDEI 1722


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = -3

Query: 188 RVRSADAPLADKAKGPLRYNTRTFKYN 108
           R RS +  +         YN   +KYN
Sbjct: 306 RERSKERKIISSLSNNYNYNNNNYKYN 332


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 257 VEIFGGGLYLR 289
           VE F GG+YLR
Sbjct: 478 VENFKGGMYLR 488


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 257 VEIFGGGLYLR 289
           VE F GG+YLR
Sbjct: 478 VENFKGGMYLR 488


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 163 LPIKPKARSAITLEHLNTTDVIR*VKTLKFRLPYLL 56
           +PI    R+  +  +    D  R VK   F L Y+L
Sbjct: 1   MPILIPHRNPASANYYENKDGARIVKASHFELDYML 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,923
Number of Sequences: 438
Number of extensions: 2576
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)