Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o16
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...   225   5e-60
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   4.8  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   4.8  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   6.3  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   6.3  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.3  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    26   6.3  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   8.3  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.3  

>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score =  225 bits (550), Expect = 5e-60
 Identities = 109/209 (52%), Positives = 142/209 (67%), Gaps = 6/209 (2%)
 Frame = +1

Query: 109 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 288
           MD+QNR G + GGGGVA + E+N  RRERLR+LALETIDL+KDPY MKNHLG++EC+LCL
Sbjct: 1   MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCL 60

Query: 289 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXP-----EKPRIEPKK-FVKIGR 450
           T H NE SYL HTQGKKHQ                          +  ++ KK  VKIGR
Sbjct: 61  TTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSVVKIGR 120

Query: 451 PGYRVTKQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAE 630
           PGY+V+K ++ E+G+  L FQ+ YP+I     PR+R MSAYEQ++E PDR++QYL+ AAE
Sbjct: 121 PGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAE 180

Query: 631 PYETIAFKVPSREVEKHDSKFWTHWNKDT 717
           PYE+IAFK     +++   KFW++W+  T
Sbjct: 181 PYESIAFK-----IDRAPGKFWSYWDAPT 204


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +1

Query: 466 TKQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETI 645
           T   DP    + ++  +D P+ A G        SA    I PP R W    F ++ +E I
Sbjct: 646 TSLLDPARAVRKVIDGIDPPKEA-GAGATADVESAANSPITPP-RTWHSPDFTSKSFEPI 703

Query: 646 AFKVPSR 666
             K+PSR
Sbjct: 704 ERKLPSR 710


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 CKLCLTLHNNEGSYLAHTQGKKHQ 345
           C++C     +EG+Y +H   KKH+
Sbjct: 72  CEVCNKKFYSEGAYSSHMASKKHR 95


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 476 KILKLDSRACSSK*IIQRLQRVLYLDIDLCLLMNRRLSLQTADGSICY---LQQSLMKLL 646
           K++K+D+    SK +     R++ +DID+  L +   +   +   + +   L+ +L +  
Sbjct: 87  KVIKIDANPLKSKHLETATARIMGMDIDIVNLRHHDYTNSNSSNKLVFGTPLEDALRRDA 146

Query: 647 HLKSLAEKLKS 679
            + +L   LKS
Sbjct: 147 TINALFYNLKS 157


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 121 NRPGGKTGGGGVASWSESNRDRRERLRQLA 210
           NR G   GGG    + +SNR  R R +Q A
Sbjct: 455 NRGGHPRGGGNRGGYRQSNRQPRYRGQQKA 484


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 605 GSICYLQQSLMKLLHLKSLAEKLKS 679
           G+ CY+   L+ L HLK   + L S
Sbjct: 47  GNTCYVSSVLVSLYHLKPFRDSLNS 71


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = +1

Query: 481 PETGQQSLLFQVDYPE-IAEGVIPRHRF-MSAYEQKIEPPDRRWQYLLF---AAEPYETI 645
           P    Q   F V YP+ I  G  P +R   +  + K +  D +    +    A EPY+ I
Sbjct: 417 PPKAVQGYRFNVFYPDLIGTGRAPTYRIERTRRKNKSDTTDLQDDVCIIRFIAGEPYQDI 476

Query: 646 AFKVPSRE 669
           AF +  ++
Sbjct: 477 AFSIVDKD 484


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 539 VLYLDIDLCLLMNRRLSLQTADGSICYLQQSLMK 640
           + +LD D  L+MN+ LSLQ    S   LQ+SL++
Sbjct: 156 IWWLDQD-ALIMNKNLSLQELFLSPAMLQKSLLR 188


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 617 YLQQSLMKLLHLKSLAEKLKSMIQNS 694
           YLQ +L++L    S+ EK KS  QNS
Sbjct: 917 YLQLNLVRLRVYISVLEKYKSQAQNS 942


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 166 SESNRDRRERLRQLALETIDLNKDPYFMKN 255
           + SN+D R R+     + IDLN  P  +KN
Sbjct: 438 ASSNQDYRVRVLSRNFKCIDLNNVPEIIKN 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,559
Number of Sequences: 5004
Number of extensions: 52534
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)