Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o14
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    46   2e-06
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    35   0.004
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    33   0.017
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    31   0.039
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    27   0.64 
SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    27   0.64 
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    27   0.85 
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.0  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   2.6  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   2.6  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   3.4  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   4.5  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   4.5  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    24   6.0  
SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomy...    24   6.0  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   6.0  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    24   7.9  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    24   7.9  

>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 46.0 bits (104), Expect = 2e-06
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 15  GVI-TYSMELFPTSVRGLLLGLGALTSRIGNMMAPLTPMLMTFSPSIPSIFFGCAAVMSG 191
           GV+  Y+ E+FP+ VRG  +GL A  +RI  + +P+  M    + S P    G   + +G
Sbjct: 479 GVLYAYTPEVFPSKVRGTAVGLAASANRILGIFSPVIAMRANLTTSAPIFVSGALFIFAG 538

Query: 192 LLIILTP 212
           +L++  P
Sbjct: 539 ILVVFFP 545


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 34.7 bits (76), Expect = 0.004
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +3

Query: 27  YSMELFPTSVRGLLLGLGALTSRIGNMMAPLTPMLMTFSPSIPSI-FFGCAAVMSGLLI- 200
           Y  E+FP  VRG   G+ A   + G ++A L    +T      ++ +  C  +  G+L  
Sbjct: 472 YPAEVFPARVRGTAHGISAALGKCGAILASLLFNFLTSIIGYGNVMWIFCGCMWGGILFT 531

Query: 201 ILTPETRDQPLLDTVRQVE 257
           +L PET+ +   D + +VE
Sbjct: 532 LLLPETKGRD-ADEIDRVE 549


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 32.7 bits (71), Expect = 0.017
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 27  YSMELFPTSVRGLLLGLGALTSRIGNMMAPLTPMLMTFSPSIPSI-FFGCAAVMSGLLI- 200
           Y  E+FP  VRG   G+ A   + G ++A L    +T      ++ +  C  +  G+L  
Sbjct: 471 YPAEVFPARVRGTAHGVSAALGKCGAILASLLFNFLTGVIGYGNVMWIFCGCMWGGILFT 530

Query: 201 ILTPETR 221
           +L PET+
Sbjct: 531 LLLPETK 537


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 31.5 bits (68), Expect = 0.039
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 27  YSMELFPTSVRGLLLGLGALTSRIGNMMAPLTPMLMTFSPSIPSIFFGCAAVMSGLLI-- 200
           Y  E+FP  VRG   GL A   + G ++A L    +T      ++ +     M G +   
Sbjct: 460 YPAEVFPARVRGTAHGLSAALGKCGAILASLLFNFLTSVIGYGNVMWIFCGCMWGAIFFT 519

Query: 201 ILTPETR 221
           +L PET+
Sbjct: 520 LLLPETK 526


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 133 INIGVRGAIIFPILDVSAPRPSNNPR---TLVGNSS 35
           +NI +  A++F ILD S  +  NN R   TL+G  S
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRS 56


>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 117 LTPMLMTFSPSIPSIFFGCAAVMSGL 194
           + P +++F  ++ S FFGCAA + GL
Sbjct: 1   MNPKVVSFVRNLTSSFFGCAAGILGL 26


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 36  ELFPTSVRGLLLGLGALTSRIGNM 107
           ELFP SVRGL  G+    +  GN+
Sbjct: 469 ELFPMSVRGLGTGMSTAVNWAGNL 492


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 106 IFPILDVSAPRPSNNPRTLV-GNSSIEYVMT 17
           +F   D+ AP P   PRT+V    SI Y +T
Sbjct: 84  VFYTFDIIAPLPRCTPRTIVTQEGSISYKLT 114


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +3

Query: 6   CFTGVITYSM-ELFPTSVRGLLLGLGALTSRIGNMMAPLTPMLMTFSPSIPSIFFGCAAV 182
           C   +  +S+ E+F    RG+ +G+  L++ +G  + PL    +  S     I +    +
Sbjct: 163 CAEALTQFSVSEVFFEHERGIKIGIYILSTSVGTYLGPLAAGYIASSQGWRWIGW-WGLI 221

Query: 183 MSGLLIILTPETRDQPLLDTVRQVEESVLK 272
           +SG+  +L   T ++   D    ++   ++
Sbjct: 222 ISGITFVLFLFTFEETTFDRAAAIDRKQIQ 251


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 247 RTVSNSGWSLVSGVRMISNP-DITAAQPKNIEGIDGEK 137
           RT   + W++ S  R+ SNP  I  + P++I+     K
Sbjct: 156 RTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNK 193


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 36  ELFPTSVRGLLLGLGALTSRIGNMM--APLTPMLMTFSPS 149
           ELFP  VR L  G     + +GN++  A    M+ + +P+
Sbjct: 459 ELFPMEVRALGAGFSTAINWVGNLIISASFLTMMESITPT 498


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 150 IPSIFFGCAAVMSGLLI 200
           +P  F GC A+M+G+ I
Sbjct: 365 LPMAFLGCFAIMTGMFI 381


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 109 IIFPILDVSAPRPSNNPRTLVGNS 38
           II  ILD   P  SN  RT+ GNS
Sbjct: 76  IIKKILDKRLPMSSNMARTVKGNS 99


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 141 SPSIPSIFFGCAAVMSGLLIILTP 212
           SP I S F GCA++ S    I+ P
Sbjct: 540 SPLIVSEFIGCASMFSNGAFIVNP 563


>SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 206

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 317 YSILHSSCNGIDXXXXXXXXXXXTYRIQQRLVSCLRRQDD 198
           Y   +S CN  +              +QQR+ +C+RR D+
Sbjct: 63  YLYKNSQCNPDEIDLHGLYIDEAVQAVQQRIENCIRRGDN 102


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 97  ILDVSAPRPSNNPRTLVGNSSIEYVMTPVKQ 5
           I+D   P+PS +PR  V ++   +   PV Q
Sbjct: 250 IIDNEIPKPSESPRRSVSSTPPVHPPPPVPQ 280


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 58  RTLVGNSSIEYVMTPVKQP 2
           R LVGN ++E+V +P   P
Sbjct: 165 RKLVGNPNLEFVASPALAP 183


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 34  WSYFRLVYEGYYLVLARS 87
           W+Y+   + GY++ LA S
Sbjct: 154 WAYYGFSFVGYFIALAHS 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,419
Number of Sequences: 5004
Number of extensions: 29511
Number of successful extensions: 80
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)