Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o12
         (158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   1.0  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    23   7.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    22   9.5  

>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 118 LRCDVSEIKLTTYNSETVPHYGYSAVFVKRS 26
           +R DVSE++   YN  +  H+G       RS
Sbjct: 178 VRIDVSEVRKFCYNCASDEHFGDDCTLPSRS 208


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 144 HKDLFNLLNFDAMFQKLN 91
           HK  FNL NF + +QKL+
Sbjct: 143 HKS-FNLHNFQSFYQKLS 159


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 150 LNHKDLFNLLNFDAMFQKLN*RLIIQKQ 67
           L H+DL   LN  AM  K    L I K+
Sbjct: 52  LKHRDLNRKLNLRAMMSKSEDNLQILKE 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,257
Number of Sequences: 5004
Number of extensions: 6479
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)