Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o12
         (158 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748...    27   2.1  
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445...    27   2.7  
02_02_0053 + 6396442-6396921,6397027-6397122,6397232-6397345,639...    26   4.8  
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    25   8.3  

>08_01_0774 +
           7482311-7482919,7484012-7484077,7484211-7484384,
           7484473-7484603,7484726-7484802,7484981-7485064,
           7487885-7488066,7488189-7488266,7489813-7489945,
           7491610-7491670,7491861-7491942,7492143-7492271,
           7492510-7492653,7493102-7493204,7493382-7493513,
           7494127-7494485,7495149-7495229,7495384-7495450,
           7495636-7495706,7496087-7496178,7496365-7496458,
           7497692-7497789,7498206-7498341,7498599-7498618,
           7498781-7498876,7498973-7499060,7499171-7499288,
           7499738-7499759,7500203-7500326,7500625-7500702,
           7500837-7500955,7501816-7501869,7502260-7502362,
           7503133-7503261,7503345-7503453,7503788-7503819
          Length = 1424

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 7   LNKCPAMNASQKPLNIRNAVLFLNYKSLI 93
           LNK P      K + I   V+F+ Y SLI
Sbjct: 384 LNKLPYSKIDSKAVGITTGVIFVTYSSLI 412


>02_05_1312 +
           35642687-35642923,35643712-35643831,35644468-35644534,
           35644673-35644694,35645053-35645152,35645282-35645414,
           35645483-35645517,35645708-35646409,35646789-35647121,
           35647337-35647601,35647665-35647999,35648105-35648177,
           35648271-35648356,35648479-35648598,35648674-35648741,
           35648825-35648882
          Length = 917

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 124 TKLRCDVSE-IKLTTYNSETVPHYGYSAVFVKRS 26
           TKL CD+S+ + + T+ +E VP   Y AV +K +
Sbjct: 574 TKLHCDMSDAVNILTHTAE-VPCETYDAVQIKNT 606


>02_02_0053 +
           6396442-6396921,6397027-6397122,6397232-6397345,
           6397723-6397791,6397891-6397965,6398262-6398336
          Length = 302

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 121 KLRCDVSEIKLTTYNSETVPHYGYSAVFVKRSLRDTYLG 5
           +LR D+      TY++  +P  GY    VK+ L+  YLG
Sbjct: 141 ELRRDLKVKAFKTYHA--IPSQGYVIYTVKQKLKPEYLG 177


>06_01_0090 -
           724296-724532,724756-724938,725038-725088,725520-725639,
           725738-725840,726106-726264,726728-726846,726891-727004,
           727119-727277,727404-727451,728464-728640,729064-729116,
           729549-729661,729793-729873,729966-730081,730786-730905,
           732321-732429,732593-732770,732852-732920,733102-733233,
           733657-733766,733843-734003,734081-734171,734258-734355,
           734499-734619,734732-734892,734985-735090,735142-735236,
           735828-735852,736008-736084,736196-736282,736372-736421,
           736558-736639,736735-736795,737064-737116,737206-737395,
           737472-737595,737860-737962,738064-738156,740344-740422,
           740508-740584,740915-741043,742614-742731,742816-742913,
           743457-743546,744998-745123,745238-745351,745488-745611,
           745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 150 LNHKDLFNLLNFDAMFQKLN*R 85
           L HKD+F+LL F   FQ+ N R
Sbjct: 271 LRHKDVFDLLQFVFGFQEDNVR 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,001
Number of Sequences: 37544
Number of extensions: 31031
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 14,793,348
effective HSP length: 33
effective length of database: 13,554,396
effective search space used: 257533524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)