Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o12
         (158 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 103  SEIKLTTYNSETVPHYGY 50
            ++  L TYN  T+PH G+
Sbjct: 1535 TQFALQTYNGRTIPHDGF 1552


>Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical
           protein K10G4.1 protein.
          Length = 802

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 148 KSQRFI*STKLRCDVSEIKLTTYNSETVPHYGYSAVFVKRSLRD 17
           K Q +  S  L  D +++++  +NS TV HY    +  K  + +
Sbjct: 495 KFQTYDISLSLSSDDAKLRIRQFNSHTVFHYSPQPIGCKLEITE 538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,386
Number of Sequences: 27780
Number of extensions: 35391
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)