Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o12
         (158 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      20   2.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   3.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   5.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   5.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   5.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   5.6  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              19   7.4  

>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 10 NKCPAMNASQKPLNIRNAVL 69
          +KC A++   +PL  R+A L
Sbjct: 28 SKCEAVSNDMQPLEARSADL 47


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 91  LTTYNSETVPHYGYSAVFVKRS 26
           + T   +   HY +  VFVK S
Sbjct: 270 ILTLGKKEFSHYEHQNVFVKNS 291


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  NF*NIASKFSRLNKSL*FKK 154
           +F N+  KF+ L KS  FK+
Sbjct: 458 SFFNMFKKFASLKKSPYFKE 477


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 68  STALRIFSGFCEAFIAGH 15
           S  +RIF+  C   + GH
Sbjct: 274 SVFMRIFNLICMMLLIGH 291


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 68  STALRIFSGFCEAFIAGH 15
           S  +RIF+  C   + GH
Sbjct: 242 SVFMRIFNLICMMLLIGH 259


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  NF*NIASKFSRLNKSL*FKK 154
           +F N+  KF+ L KS  FK+
Sbjct: 458 SFFNMFKKFASLKKSPYFKE 477


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 33 SVHCGT 16
          SVHCGT
Sbjct: 19 SVHCGT 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,425
Number of Sequences: 438
Number of extensions: 465
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 32
effective length of database: 132,327
effective search space used:  2646540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)