Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o10
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    40   2e-04
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   0.97 
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   3.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    24   9.0  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    24   9.0  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    24   9.0  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    24   9.0  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    24   9.0  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +2

Query: 158 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDD 265
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DD
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADD 38


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 95  NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGG-KGTPRRKKKV 238
           NSV++K         +  NSR+NS    +  S V + G  G+P  K+K+
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKM 179


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 146 KNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 238
           K  +   +KLKK   ++++    T +RK+KV
Sbjct: 148 KEKKEKKDKLKKKSKRLKLDDSHTQKRKRKV 178


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 423 FCHLFNM*NIFLL-IEQFPITLYYFFFSVC 337
           F  LF +  IF++    FPI  + FFF +C
Sbjct: 133 FSFLFFLSQIFIVYFSSFPILHFLFFFFLC 162


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -1

Query: 383 LNSFLLLCTISSFLSVHK 330
           LNSF+L+ T+S+ +++H+
Sbjct: 126 LNSFVLMQTVSNIVNLHR 143


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 268 KTAVIAQKVVSEHILIYLFIYLCTDRKEEIVQSNRK 375
           +TA +  + +  ++++YL  YL   RKE I Q+N +
Sbjct: 73  QTANVLGEALYNNLVLYLEEYLARLRKECISQTNHE 108


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 399 NIFLLIEQFPITLYYFFFSVCT 334
           N+F+ I Q P    +FF  VCT
Sbjct: 2   NLFVYIAQNPTLTKWFFCCVCT 23


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 277 VIAQKVVSEHILIYLFIYLCTDRKEEIVQSNRKLFN 384
           +  QK +S+ I  YL+ Y C   KE  +   +K+ N
Sbjct: 223 ICRQKSISKKIAYYLYSYECFPMKE--IDWKKKIVN 256


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 238 NLLLASRCALTADAYLRLEFL*FFAVHSAVFKRK 137
           N +LASR  LT   +LRL  L    +   VF ++
Sbjct: 107 NTMLASRAPLTVPMFLRLSDLKLNGIVVLVFSKQ 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,330
Number of Sequences: 5004
Number of extensions: 31175
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)