Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o10
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264...    51   4e-07
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53...    51   4e-07
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095...    41   5e-04
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567...    28   3.8  
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    27   8.8  

>10_08_0411 -
           17725661-17725842,17726066-17726104,17726379-17726435,
           17726524-17726672,17727195-17727262,17727796-17727798
          Length = 165

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 23/36 (63%), Positives = 26/36 (72%)
 Frame = +2

Query: 158 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDD 265
           MN +KLKK+   VR GGKG+ RRKKK VH T  TDD
Sbjct: 2   MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDD 37


>03_01_0067 -
           538929-539143,539306-539344,539579-539635,539727-539875,
           540298-540365,542009-542093,542185-542246,542612-542700,
           543034-543088,544127-544252,544477-544576,544697-545499
          Length = 615

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 23/36 (63%), Positives = 26/36 (72%)
 Frame = +2

Query: 158 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDD 265
           MN +KLKK+   VR GGKG+ RRKKK VH T  TDD
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDD 476


>03_06_0698 +
           35608666-35608709,35608810-35608958,35609493-35609531,
           35610024-35610163,35611130-35611244,35611281-35611399,
           35611413-35611979
          Length = 390

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 18/24 (75%), Positives = 18/24 (75%)
 Frame = +2

Query: 194 VRIGGKGTPRRKKKVVHVTAATDD 265
           VR GGKGT RRKKK VH T  TDD
Sbjct: 5   VRTGGKGTVRRKKKAVHKTGTTDD 28


>12_01_0667 +
           5674322-5674393,5674455-5675159,5676051-5676087,
           5676238-5676335,5676452-5676475
          Length = 311

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +2

Query: 95  NSVIKK-CPVLTLTQFTLKNSRMNSEKLKKLQS--QVRIGGKGTPRRKKKVVHVTAAT 259
           ++V+++ C  + + +  LK      E+LKKL    + R GG G P R K  +H+ +A+
Sbjct: 241 DAVVQRFCQEVGVKRRVLKYGSGAPEELKKLDFFWERRGGGGGNPLRNKMKIHLASAS 298


>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
            18230710-18231949,18232085-18232419,18232500-18232577,
            18232872-18232978,18233020-18233062
          Length = 1506

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 148  KQQNEQRKIKETPVASTHRR*GHTETQEEGCSRYC 252
            ++Q EQ+K ++  VA+  R+ G  E +E+   R C
Sbjct: 1368 QKQEEQKKKRDADVAAKKRQRGEEERKEKQRKRKC 1402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,156,489
Number of Sequences: 37544
Number of extensions: 174558
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)