Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o10
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    58   3e-09
Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 28/42 (66%), Positives = 35/42 (83%), Gaps = 3/42 (7%)
 Frame = +2

Query: 149 NSRMNSEKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDD 265
           +S+  +E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DD
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADD 43


>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 92  LNSVIKKCPVLTLTQFTLKNSRMNSEKLK 178
           L SVI K     +T ++ K+SR+NS KL+
Sbjct: 37  LISVIDKQQCRQITDYSAKDSRINSRKLR 65


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 92  LNSVIKKCPVLTLTQFTLKNSRMNSEKLK 178
           L SVI K     +T ++ K+SR+NS KL+
Sbjct: 37  LISVIDKQQCRQITDYSAKDSRINSRKLR 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,650,694
Number of Sequences: 27780
Number of extensions: 186375
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)