Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6o08
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 39 5e-04
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.3
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 5.3
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 26 5.3
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.3
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun... 25 7.0
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 7.0
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 25 7.0
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po... 25 9.2
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 39.1 bits (87), Expect = 5e-04
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = +2
Query: 332 KASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELD--VRML 505
KA +T +RVL+I+ E +V + I+ A+ D +R+L
Sbjct: 126 KAGVTKAVPNVHDRVLTISGPL-ENVVRAYRFIIDIFAKNSTNPDGTPSDANTPRKLRLL 184
Query: 506 IHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQ 637
I S G +IG+ G +IK +++K R+ + PQS+ER V+
Sbjct: 185 IAHSLMGSIIGRNGLRIKLIQDKCSCRMIASKDMLPQSTERTVE 228
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 524 GCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERI 631
GC+IG+ GSKI E+R +G+++ I ++ ER+
Sbjct: 333 GCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERM 368
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 482 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
Q+L +R L+ AG +IGKAG + ELR T + + + + P +R++
Sbjct: 92 QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGV-TKAVPNVHDRVL 141
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 394 FSCYGEYPFGAGAIWDCYRGF 332
F CY E P G AI C + F
Sbjct: 293 FLCYSEKPNGINAIMKCMKNF 313
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 76 LNVYCLCFSALVSFKRSI 129
L VYC F LVS+KRS+
Sbjct: 521 LAVYCDTFDVLVSYKRSL 538
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -3
Query: 159 SSYGYPGSH---LY*SFERH*STKA 94
SSY YP SH Y SF+RH S+ +
Sbjct: 158 SSYSYPSSHQDPAYSSFKRHRSSNS 182
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 530 VIGKAGSKIKELREKTGARLKI 595
VIGK GS + LRE G ++ +
Sbjct: 744 VIGKNGSNVSSLREDLGVQINV 765
>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 286 NRKRWQQYIKAQKPVQSLYNSPRLPRPRTGTL 381
N + +Y +KP+Q+ S RL +PRT +
Sbjct: 88 NEDKAMKYGNGKKPIQTQTLSGRLQKPRTNLM 119
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 271 GGWVDNRKRWQQYIKAQKPVQSLYNSPRLP 360
GG +D + W Q +A+ Q Y R+P
Sbjct: 292 GGCIDREEEWIQQFQARCIKQYFYGDDRMP 321
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = -2
Query: 385 YGEYPFGAGAIWDCYRGFVLASEL*YIAATFSDYRPSHLARYQEGDFIVCLPVP 224
YG P G GA W C A E A F R H+ R+ F CLP P
Sbjct: 55 YGSTPAG-GAEW-CSE----ALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKP 102
>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 258 RKVTSSSVCRCRFWAGPSSPYASRFILMPNKVQSSYGYPG 139
+ V S + + W+ PS+P A ++ + +SY Y G
Sbjct: 38 KAVPSETAAEVKEWSMPSAPTAPKYDVDFTSALNSYKYEG 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,383
Number of Sequences: 5004
Number of extensions: 49343
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -