Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6o08
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 68 7e-12
SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30) 47 1e-05
SB_53788| Best HMM Match : KH_1 (HMM E-Value=0) 45 5e-05
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0) 30 1.8
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 29 2.4
SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 28 5.6
SB_17221| Best HMM Match : Neur_chan_memb (HMM E-Value=1.5e-10) 28 5.6
SB_9067| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_38117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014) 28 7.4
SB_44339| Best HMM Match : Leu_leader (HMM E-Value=2.4) 27 9.7
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.7
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 67.7 bits (158), Expect = 7e-12
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Frame = +2
Query: 173 GIKMKRDAYGDDGPAQKRHRQTDD-------EVTFLIPSKVAXXXXXXXXXXXXXLRSQY 331
G +KR A GD KR R++ D + LI SK A LR++Y
Sbjct: 23 GGSLKRPADGDYNGNVKRMRESSDVDSNAPTTLRILIQSKDAGGIIGKGGTNIRRLRTEY 82
Query: 332 KASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIH 511
A + VPD ERVL+ITA L +I+ +++P + E Q G +++ML+
Sbjct: 83 NAVVNVPDTNSNERVLTITAPRQSAL-DILAEVVPKIGEV--QYGH-------EIQMLVQ 132
Query: 512 QSRAGCVIGKAGSKIKELREKTGA 583
+S+ G +IG+AG KIKE+RE + A
Sbjct: 133 RSQVGSIIGRAGYKIKEIREASSA 156
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +2
Query: 455 NQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
+ GG+ G + ++ I + AG +IGK G +IK +R + A +KI + P S++RI+
Sbjct: 310 SSGGNTAGGDQTSTQVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKI-DDPLPGSNDRII 368
>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
Length = 379
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +2
Query: 317 LRSQYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDV 496
++ + A I + D PER++S+T D +V I L + + +
Sbjct: 33 MQGKSNAHINISDGSTPERIVSVTGTKD-AVVTAFALIGQKLEDELKSNSKSNTTPPVTL 91
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGA 583
R+++ S+ G +IGK G+KIKE+RE +GA
Sbjct: 92 RLIVPGSQCGSIIGKGGAKIKEIREVSGA 120
>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 356
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +2
Query: 494 VRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQ-SSERIV 634
+++++ S AG +IGKAGS IK + E+TGAR++I A + ERIV
Sbjct: 105 MKIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQKDAESVAGERIV 152
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +2
Query: 494 VRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSA--PQSSERI 631
+++L+ AG +IGK G I ++++ TGAR+K+ N+ P + ERI
Sbjct: 14 LKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERI 61
>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/44 (38%), Positives = 33/44 (75%), Gaps = 3/44 (6%)
Frame = +2
Query: 485 ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGA---RLKIFSNS 607
E+++R++IH S AG +IG+ G+ +K + ++TGA +++ FSN+
Sbjct: 67 EVEMRLVIHDSHAGRIIGRKGNNLKSVMDETGASSIKVRFFSNN 110
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 485 ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIF-SNSAPQSSERI 631
E ++ + + + G VIGK G IK ++ ++GAR++ + P SS+R+
Sbjct: 212 EKELEIPVPRDVVGFVIGKGGETIKRIQAESGARVQFNPAKDNPNSSDRM 261
>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.1 bits (67), Expect = 0.79
Identities = 11/47 (23%), Positives = 27/47 (57%)
Frame = +2
Query: 485 ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSE 625
E + + + S +G +IG+ G+ IK+++++TG + + P+ +
Sbjct: 55 ETSLELKVPASVSGVIIGRGGANIKKIQKETGTYINFKDDDEPKEKD 101
>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 31.1 bits (67), Expect = 0.79
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +2
Query: 506 IHQSRAGCVIGKAGSKIKELREKTGARLKI 595
+ +S+ G VIGK G++I + ++TGA++ +
Sbjct: 302 LKESQIGMVIGKGGNRINSIGQETGAKIYV 331
>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 1650
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +2
Query: 440 LAEFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQS 619
L E N+ +G +++R R +IG+ G+ I+++RE TGAR+ +F + +
Sbjct: 722 LLELTNE--KELGSYTVEIRAKPEHHRF--LIGRGGASIRKVRENTGARI-VFPAAKDED 776
Query: 620 SERI 631
E I
Sbjct: 777 KELI 780
>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 461 GGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQ-SSERIV 634
GG D+E+ + Q G +IG+ G +K + +++GA++++ S + S+ RI+
Sbjct: 172 GGKYTTDKEI-WEIEFPQILCGRLIGRKGKNVKAISDQSGAKIRLIPQSPGEVSTHRII 229
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
+M + S +IG+AG + +RE TGA + I ++ + I+
Sbjct: 913 KMSVSSSVVSRIIGRAGCNVNAIRETTGAHIDIDTSRQKSTGSCII 958
>SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 140 DHTFIDRLKDTKALKHKQYTFRYKNLVKSKLDLNIKTLKMAATI 9
D T D D K L +QY RY+++ + K D + L +A TI
Sbjct: 547 DETVPDCAGDQKELPCRQYALRYESVRRRKQDSSKALLTLAITI 590
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 359 PGPERVLSITAEDDETLVEIIKDIMPCLAEFH--NQGGSRMGDQELDVRMLIHQSRAGCV 532
P E+ + A+ ++TL EI+KD+ + H Q +M DQ+ L+ +
Sbjct: 404 PNKEKNTATPAKLEDTLPEIVKDLHQVAQDLHQVTQDLHKMADQQPAFERLVKELHDVVA 463
Query: 533 IGKAGSKIK 559
KA S K
Sbjct: 464 SKKADSSTK 472
>SB_17221| Best HMM Match : Neur_chan_memb (HMM E-Value=1.5e-10)
Length = 624
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 369 NGYSP*QLKMTKRSWKSLKISCRAWQNFITRVDPGW 476
NG S + ++ +SW+S+ +S ++WQ+ + D W
Sbjct: 14 NGKSWQSMVVSDKSWQSMVVSGKSWQSMVVS-DKSW 48
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 369 NGYSP*QLKMTKRSWKSLKISCRAWQNFITRV 464
NG S + ++ +SW+S+ +S ++WQ+ + V
Sbjct: 181 NGKSWQSMVVSDKSWQSMVVSDKSWQSMVVNV 212
>SB_9067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 369 NGYSP*QLKMTKRSWKSLKISCRAWQNFITRVDPGW 476
NG S + ++ +SW+S+ +S ++WQ+ + D W
Sbjct: 194 NGKSWQSMVVSDKSWQSMVVSDKSWQSMVVS-DKSW 228
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 369 NGYSP*QLKMTKRSWKSLKISCRAWQNFITRVDPGW 476
NG S + + +SW+S+ +S ++WQ+ + D W
Sbjct: 184 NGKSWQSMVVNGKSWQSMVVSDKSWQSMVVS-DKSW 218
>SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 155 PTVTLDHTFIDRLKDTKALKHKQYTFRY 72
P L H FID++ D KHK +RY
Sbjct: 397 PEFPLHHAFIDKIWDMWEKKHKVNKYRY 424
>SB_38117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 322 KPVQSLYNSPRLPRPRTGTLHN 387
KP +P +PRPR+ T+HN
Sbjct: 222 KPTTRPATAPEIPRPRSPTIHN 243
>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
Length = 406
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 155 PTVTLDHTFIDRLKDTKALKHKQYTFRY 72
P L H FID++ D KHK +RY
Sbjct: 340 PEFPLHHAFIDKIWDMWEKKHKVNKYRY 367
>SB_44339| Best HMM Match : Leu_leader (HMM E-Value=2.4)
Length = 493
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 270 LLGIRKVTSSSVCRCRFWAGPSSPYASR 187
LL +RK + +SVC C F G Y SR
Sbjct: 81 LLTVRKGSITSVCECSFTHGAQRLYYSR 108
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 304 QYIKAQKPVQSLYNSPRLPRPRTGTLHNS 390
Q IK P++ Y +P RPRT T N+
Sbjct: 4564 QVIKQSTPIEQNYRAPAPRRPRTRTPRNA 4592
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,494,534
Number of Sequences: 59808
Number of extensions: 389431
Number of successful extensions: 984
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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