Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6o08
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 107 7e-24
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 107 7e-24
AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned exp... 54 7e-08
AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical ... 47 1e-05
U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical pr... 39 0.003
U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 37 0.011
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 37 0.011
U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical pr... 32 0.30
U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 29 2.8
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 29 2.8
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 29 2.8
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 29 3.7
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 29 3.7
AF026215-3|AAB71323.3| 563|Caenorhabditis elegans Hypothetical ... 28 4.9
AC025726-26|AAK73933.2| 129|Caenorhabditis elegans Hypothetical... 28 6.5
Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical ... 27 8.6
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 107 bits (257), Expect = 7e-24
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 12/163 (7%)
Frame = +2
Query: 182 MKRDAYGDDGPAQKRHRQ--TDD----------EVTFLIPSKVAXXXXXXXXXXXXXLRS 325
MKR+ DDG RH++ TD EV L+ SK A LR+
Sbjct: 1 MKREHDNDDGDRTGRHKRPKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRA 60
Query: 326 QYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRML 505
++ A + VPD PERV ++TA D++T++ I+KD++P L + ++ +VRML
Sbjct: 61 EFNAHVQVPDSNTPERVCTVTA-DEKTVLNILKDVLPRLEDNFSER------DPCEVRML 113
Query: 506 IHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
+HQS AG +IG+ GSKIKELREK ARLKIF+ AP S++R++
Sbjct: 114 VHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVL 156
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 107 bits (257), Expect = 7e-24
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 12/163 (7%)
Frame = +2
Query: 182 MKRDAYGDDGPAQKRHRQ--TDD----------EVTFLIPSKVAXXXXXXXXXXXXXLRS 325
MKR+ DDG RH++ TD EV L+ SK A LR+
Sbjct: 18 MKREHDNDDGDRTGRHKRPKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRA 77
Query: 326 QYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRML 505
++ A + VPD PERV ++TA D++T++ I+KD++P L + ++ +VRML
Sbjct: 78 EFNAHVQVPDSNTPERVCTVTA-DEKTVLNILKDVLPRLEDNFSER------DPCEVRML 130
Query: 506 IHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
+HQS AG +IG+ GSKIKELREK ARLKIF+ AP S++R++
Sbjct: 131 VHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVL 173
>AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned
expression site protein 4 protein.
Length = 430
Score = 54.4 bits (125), Expect = 7e-08
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Frame = +2
Query: 317 LRSQYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQG---GSRMGDQE 487
+R + A I + D PER+++IT TL I K +F + +
Sbjct: 97 IREESGAKINISDGSCPERIVTITG----TLGVIGKAFNMVCNKFEEDMLLLPNSVPKPP 152
Query: 488 LDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
+ +R+++ ++ G +IGK GSKIK++RE TGA +++ S P S+ER V
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAV 201
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 488 LDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
L +R+L+ G +IGK G +IK++RE++GA++ I S P ERIV
Sbjct: 72 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCP---ERIV 117
>AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical
protein Y59A8B.10 protein.
Length = 413
Score = 47.2 bits (107), Expect = 1e-05
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Frame = +2
Query: 164 TLLGIKMKRDAYGDDGPAQKR-HRQTDDE------VTFLIPSKVAXXXXXXXXXXXXXLR 322
T G+K +DA DGPA K+ H ++E + LIPS L+
Sbjct: 11 TQQGVKRTQDA--SDGPANKKAHFGGEEEGGDHLSIKILIPSNAVGAIIGKGGEAMRNLK 68
Query: 323 SQYKASITVPD----CPGPERVLSITAEDDETLVEIIKDIMPCLAE-FHNQGGSRMGDQE 487
+ + + PG + + ++ +I+ I + E +QGGS D +
Sbjct: 69 NDNNCRVQMSKNSETYPGTSERICLVKGRLNNIMAVIESIQDKIREKCADQGGSDAFDHK 128
Query: 488 -----LDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIF----SNSAPQSSERIV 634
++++++ + AG VIGK+G+ IK++RE+ G +++++ S A S ER+V
Sbjct: 129 NTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSLERVV 186
>U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical
protein ZK418.9b protein.
Length = 510
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +2
Query: 458 QGGSRMGDQELDVR--MLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERI 631
Q G G QE + +++ + AG +IGK G IK L +TG +++ ++ P S +RI
Sbjct: 181 QFGGGYGAQEAQAKGEVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRI 240
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 455 NQGGSRMGDQ--ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGAR 586
NQ G++ G E+ MLI + G VIGK G I+ ++E++G R
Sbjct: 78 NQTGAQPGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQEQSGLR 123
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 500 MLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSE 625
M + + G VIGK G IK++ +TGA + + +A Q +E
Sbjct: 289 MHVPAGKCGLVIGKGGENIKQIERETGATCGL-APAAEQKNE 329
>U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical
protein ZK418.9a protein.
Length = 557
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +2
Query: 458 QGGSRMGDQELDVR--MLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERI 631
Q G G QE + +++ + AG +IGK G IK L +TG +++ ++ P S +RI
Sbjct: 228 QFGGGYGAQEAQAKGEVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRI 287
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 455 NQGGSRMGDQ--ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGAR 586
NQ G++ G E+ MLI + G VIGK G I+ ++E++G R
Sbjct: 125 NQTGAQPGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQEQSGLR 170
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 500 MLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSE 625
M + + G VIGK G IK++ +TGA + + +A Q +E
Sbjct: 336 MHVPAGKCGLVIGKGGENIKQIERETGATCGL-APAAEQKNE 376
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 494 VRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
+RM H G +IGKAGS IKE+ +KTG + +
Sbjct: 277 LRMRAHNQLCGRLIGKAGSSIKEIMQKTGTNITV 310
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 494 VRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
VRM + S G +IG G IK + TGA +KI
Sbjct: 419 VRMWVPDSMIGALIGAKGKNIKMIIRDTGASVKI 452
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +2
Query: 359 PGPERVLSITAEDDETLVE---IIKDIMPCLAEFHNQG--GSRMGDQELDVRMLIHQSRA 523
P ER+++I +D + L + I + + G G R + + +
Sbjct: 510 PVSERMVTINGDDLQLLKAQSYVFSKIAETSSSLPSSGMDGDRSHMLRIRTEVSVPTRII 569
Query: 524 GCVIGKAGSKIKELREKTGARLKI 595
G +IGK G ++EL+ TGA +KI
Sbjct: 570 GRIIGKGGQNVRELQRITGAVVKI 593
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 494 VRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
+RM H G +IGKAGS IKE+ +KTG + +
Sbjct: 401 LRMRAHNQLCGRLIGKAGSSIKEIMQKTGTNITV 434
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 494 VRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
VRM + S G +IG G IK + TGA +KI
Sbjct: 543 VRMWVPDSMIGALIGAKGKNIKMIIRDTGASVKI 576
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +2
Query: 359 PGPERVLSITAEDDETLVE---IIKDIMPCLAEFHNQG--GSRMGDQELDVRMLIHQSRA 523
P ER+++I +D + L + I + + G G R + + +
Sbjct: 634 PVSERMVTINGDDLQLLKAQSYVFSKIAETSSSLPSSGMDGDRSHMLRIRTEVSVPTRII 693
Query: 524 GCVIGKAGSKIKELREKTGARLKI 595
G +IGK G ++EL+ TGA +KI
Sbjct: 694 GRIIGKGGQNVRELQRITGAVVKI 717
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +2
Query: 350 PDCPGPERVLSITAEDDETLVEIIKDIM-PCLAEFHN---QGGSRMGDQELDVRMLIHQS 517
PD V +T E + VE K ++ +A N Q G +D+ I +
Sbjct: 44 PDADPSSGVRMVTLEGSRSNVETAKHLINEVVARSQNPRPQYGFPRAQTTIDIA--IPPN 101
Query: 518 RAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSE 625
R G +IGK+G I++L+EK+G ++ + ++ S +
Sbjct: 102 RCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQ 137
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 446 EFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSE 625
+ H+ GG G +++ +S G +IGK G IK L +TG +++ + P + E
Sbjct: 174 QMHHAGGG--GGASARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPE 231
Query: 626 R 628
R
Sbjct: 232 R 232
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +2
Query: 350 PDCPGPERVLSITAEDDETLVEIIKDIM-PCLAEFHN---QGGSRMGDQELDVRMLIHQS 517
PD V +T E + VE K ++ +A N Q G +D+ I +
Sbjct: 107 PDADPSSGVRMVTLEGSRSNVETAKHLINEVVARSQNPRPQYGFPRAQTTIDIA--IPPN 164
Query: 518 RAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSE 625
R G +IGK+G I++L+EK+G ++ + ++ S +
Sbjct: 165 RCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQ 200
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 446 EFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSE 625
+ H+ GG G +++ +S G +IGK G IK L +TG +++ + P + E
Sbjct: 237 QMHHAGGG--GGASARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPE 294
Query: 626 R 628
R
Sbjct: 295 R 295
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +2
Query: 350 PDCPGPERVLSITAEDDETLVEIIKDIM-PCLAEFHN---QGGSRMGDQELDVRMLIHQS 517
PD V +T E + VE K ++ +A N Q G +D+ I +
Sbjct: 85 PDADPSSGVRMVTLEGSRSNVETAKHLINEVVARSQNPRPQYGFPRAQTTIDIA--IPPN 142
Query: 518 RAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSE 625
R G +IGK+G I++L+EK+G ++ + ++ S +
Sbjct: 143 RCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQ 178
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 446 EFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSE 625
+ H+ GG G +++ +S G +IGK G IK L +TG +++ + P + E
Sbjct: 215 QMHHAGGG--GGASARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPE 272
Query: 626 R 628
R
Sbjct: 273 R 273
>U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical
protein F26B1.2e protein.
Length = 93
Score = 32.3 bits (70), Expect = 0.30
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Frame = +2
Query: 182 MKRDAYGDDGPAQKRHRQ--TDD----------EVTFLIPSKVAXXXXXXXXXXXXXLRS 325
MKR+ DDG RH++ TD EV L+ SK A LR+
Sbjct: 18 MKREHDNDDGDRTGRHKRPKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRA 77
Query: 326 QYKASITVPDCPGPER 373
++ A + VPD PER
Sbjct: 78 EFNAHVQVPDSNTPER 93
>U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical
protein M01A10.1 protein.
Length = 680
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 500 MLIHQSRAGCVIGKAGSKIKELREKTGA 583
MLI S+ G VIG+ G I+++ +++GA
Sbjct: 415 MLIPASKCGLVIGRGGETIRQINKESGA 442
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
++ I A VIGK GS + +RE TGA ++I
Sbjct: 1797 KLTIPAYAASRVIGKGGSNVNAVREATGAIIEI 1829
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
++ I A VIGK GS + +RE TGA ++I
Sbjct: 1797 KLTIPAYAASRVIGKGGSNVNAVREATGAIIEI 1829
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
++ I A VIGK GS + +RE TGA ++I
Sbjct: 618 KLTIPAYAASRVIGKGGSNVNAVREATGAIIEI 650
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
++ I A VIGK GS + +RE TGA ++I
Sbjct: 618 KLTIPAYAASRVIGKGGSNVNAVREATGAIIEI 650
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
++ I A VIGK GS + +RE TGA ++I
Sbjct: 1797 KLTIPAYAASRVIGKGGSNVNAVREATGAIIEI 1829
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
++ I A VIGK GS + +RE TGA ++I
Sbjct: 1797 KLTIPAYAASRVIGKGGSNVNAVREATGAIIEI 1829
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 173 PIKFRAPTVTLDHTFIDRLKDTKALKHKQYTFRYKNLVKSKLDLNIKTLKMAAT 12
PI + V L HT + L+ + QY Y L K K++++AAT
Sbjct: 1787 PISKKTMKVDLSHTELSHLRKGRMTTESQYAHDYGILTDKKHVNRFKSVRVAAT 1840
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 173 PIKFRAPTVTLDHTFIDRLKDTKALKHKQYTFRYKNLVKSKLDLNIKTLKMAAT 12
PI + V L HT + L+ + QY Y L K K++++AAT
Sbjct: 1787 PISKKTMKVDLSHTELSHLRKGRMTTESQYAHDYGILTDKKHVNRFKSVRVAAT 1840
>AF026215-3|AAB71323.3| 563|Caenorhabditis elegans Hypothetical
protein F09G2.5 protein.
Length = 563
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 412 HERFVIFSCYGEYPFGAG-AIWDCYRGFVLASEL 314
++RFV C G YP G A W C +G+++ L
Sbjct: 304 NKRFV--KCAGPYPMFRGEAAWSCIQGYIVMKRL 335
>AC025726-26|AAK73933.2| 129|Caenorhabditis elegans Hypothetical
protein Y71G12B.7 protein.
Length = 129
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 421 NDFHERFVIFSCYGEYPFGAGAIW 350
N H R IF C+GE+ F IW
Sbjct: 94 NCIHSRLSIFFCFGEFMFILKLIW 117
>Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical
protein F55D12.2 protein.
Length = 712
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 408 SWKSLKISCRAWQNFITRVD 467
SW S +I + WQN++ VD
Sbjct: 151 SWLSKRIEIKKWQNYLVEVD 170
>AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical
protein C36C9.4 protein.
Length = 671
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 630 MRSELWGAEFENIFSRAPVFSRNSLIFEPAF 538
+R EL +EF+ I R+P FS N + + AF
Sbjct: 361 IRKELLLSEFKKIKPRSPPFSNNKGVLKEAF 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,106,299
Number of Sequences: 27780
Number of extensions: 289474
Number of successful extensions: 762
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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