Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6o08
(638 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15270.2 68418.m01789 KH domain-containing protein various pr... 46 3e-05
At5g15270.1 68418.m01788 KH domain-containing protein various pr... 46 3e-05
At5g04430.2 68418.m00438 KH domain-containing protein NOVA, puta... 45 5e-05
At5g04430.1 68418.m00437 KH domain-containing protein NOVA, puta... 45 5e-05
At1g14170.1 68414.m01675 KH domain-containing protein location o... 43 1e-04
At5g53060.1 68418.m06592 KH domain-containing protein 43 2e-04
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 41 6e-04
At1g51580.1 68414.m05806 KH domain-containing protein 41 6e-04
At4g18375.2 68417.m02727 KH domain-containing protein contains s... 40 0.001
At4g18375.1 68417.m02726 KH domain-containing protein contains s... 40 0.001
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 40 0.002
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 40 0.002
At2g25970.1 68415.m03117 KH domain-containing protein 40 0.002
At2g03110.1 68415.m00264 KH domain-containing protein 39 0.003
At5g46190.1 68418.m05681 KH domain-containing protein strong sim... 38 0.007
At4g26000.1 68417.m03745 KH domain-containing protein single-str... 35 0.040
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 33 0.12
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 32 0.28
At5g09560.1 68418.m01107 KH domain-containing protein various pr... 32 0.37
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ... 31 0.49
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 30 1.1
At2g22600.1 68415.m02679 KH domain-containing protein 29 2.0
At1g62300.1 68414.m07028 WRKY family transcription factor simila... 29 2.0
At1g80340.1 68414.m09405 gibberellin 3-beta-dioxygenase / gibber... 29 2.6
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 29 2.6
At1g80330.1 68414.m09404 gibberellin 3-beta-dioxygenase, putativ... 29 3.4
At1g03400.1 68414.m00320 2-oxoglutarate-dependent dioxygenase, p... 29 3.4
At1g15550.1 68414.m01870 gibberellin 3-beta-dioxygenase / gibber... 28 4.5
>At5g15270.2 68418.m01789 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 45.6 bits (103), Expect = 3e-05
Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 25/158 (15%)
Frame = +2
Query: 197 YGDDGPAQKRHRQTD--------DEVTF--LIPSKVAXXXXXXXXXXXXXLRSQYKASIT 346
Y D+G +++R+R D D+ F L P K LR+ ++ I
Sbjct: 25 YDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIR 84
Query: 347 VPDC-PG-PERVLSITAEDDETLV-----EIIKDIMPCLAEFHNQ--------GGSRMGD 481
+ + PG ERV++I + DET +++ L H++ S G+
Sbjct: 85 IGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGE 144
Query: 482 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
+++ ++L+ + GC++G+ G ++ +R +TGA+++I
Sbjct: 145 KQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRI 182
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = +2
Query: 317 LRSQYKASITVPDC--PGPERVLSITAED--DETLVEIIKDIMPCLAEFHNQGGSRMGDQ 484
LR + +A+I V G + +++I+A + ++ I+ +M + ++ G
Sbjct: 309 LRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLV 368
Query: 485 ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
R+L+ SR GC++GK G+ I E+R T A ++I
Sbjct: 369 SFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRI 405
>At5g15270.1 68418.m01788 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 45.6 bits (103), Expect = 3e-05
Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 25/158 (15%)
Frame = +2
Query: 197 YGDDGPAQKRHRQTD--------DEVTF--LIPSKVAXXXXXXXXXXXXXLRSQYKASIT 346
Y D+G +++R+R D D+ F L P K LR+ ++ I
Sbjct: 25 YDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIR 84
Query: 347 VPDC-PG-PERVLSITAEDDETLV-----EIIKDIMPCLAEFHNQ--------GGSRMGD 481
+ + PG ERV++I + DET +++ L H++ S G+
Sbjct: 85 IGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGE 144
Query: 482 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
+++ ++L+ + GC++G+ G ++ +R +TGA+++I
Sbjct: 145 KQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRI 182
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = +2
Query: 317 LRSQYKASITVPDC--PGPERVLSITAED--DETLVEIIKDIMPCLAEFHNQGGSRMGDQ 484
LR + +A+I V G + +++I+A + ++ I+ +M + ++ G
Sbjct: 309 LRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLV 368
Query: 485 ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
R+L+ SR GC++GK G+ I E+R T A ++I
Sbjct: 369 SFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRI 405
>At5g04430.2 68418.m00438 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 334
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 446 EFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSA--PQS 619
E H+ + ++ +R L+ + AG VIGK GS I E + K+GAR+++ N P +
Sbjct: 21 EPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGT 80
Query: 620 SERIV 634
++RI+
Sbjct: 81 TDRII 85
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 524 GCVIGKAGSKIKELREKTGARLKI 595
G V+G+ G I E+ + TGAR+KI
Sbjct: 267 GLVLGRGGRNIMEITQMTGARIKI 290
>At5g04430.1 68418.m00437 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 313
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 446 EFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSA--PQS 619
E H+ + ++ +R L+ + AG VIGK GS I E + K+GAR+++ N P +
Sbjct: 21 EPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGT 80
Query: 620 SERIV 634
++RI+
Sbjct: 81 TDRII 85
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 524 GCVIGKAGSKIKELREKTGARLKI 595
G V+G+ G I E+ + TGAR+KI
Sbjct: 246 GLVLGRGGRNIMEITQMTGARIKI 269
>At1g14170.1 68414.m01675 KH domain-containing protein location of
EST 219C14T7 , gb|N38506
Length = 454
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +2
Query: 482 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAP 613
Q + VRML+ + GCVIGK G I+ LR T A++++ + P
Sbjct: 119 QTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLP 162
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 464 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
G D + R+L+ S+ GC+IGK G+ I E+R T A ++I
Sbjct: 321 GKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRI 364
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 482 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
+E V + G VIGK G I ++R++TGA +++
Sbjct: 242 REFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRV 279
>At5g53060.1 68418.m06592 KH domain-containing protein
Length = 652
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQ 637
R+L H ++AG VIGK+G+ IK +R+ TGA + + P +ERI++
Sbjct: 71 RILCHDAKAGGVIGKSGTIIKSIRQHTGAWINV-HELVPGDAERIIE 116
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Frame = +2
Query: 446 EFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIF--SNSAPQS 619
E + GG R G + R+++ + GC++GK G I+++R +T ++I ++ P+
Sbjct: 162 EEEDYGGVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRC 221
Query: 620 ---SERIVQ 637
SE IVQ
Sbjct: 222 VSLSEEIVQ 230
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 41.1 bits (92), Expect = 6e-04
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Frame = +2
Query: 320 RSQYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFH-NQGGSRMG----DQ 484
++QY+A V D G E + ED+E + E ++ + E GG
Sbjct: 128 QAQYQAQGDVQDHNGDE--VQDKVEDEEGIPEHLESLQKSEPEEDATVGGEEKRWPGWPG 185
Query: 485 ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
E RML+ + G +IG+ G IK++ E+T AR+KI + P ++ER V
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKIL-DGPPGTTERAV 234
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +2
Query: 482 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
+ + R+L +R G +IGK GS I+ L+ TG+++++ + S ER+V
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVV 67
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFS 601
R+L+H G ++GK G I E+R TGA +++F+
Sbjct: 363 RLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFA 397
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 476 GDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFS 601
G+ E RM++ ++ ++ K G I+++RE +GA ++I S
Sbjct: 144 GESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISS 185
>At4g18375.2 68417.m02727 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 606
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 356 CPGPERVLSITA-EDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRAGCV 532
C E V+ +TA E + + + + + L E+ N + + + +++L+ GCV
Sbjct: 354 CGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDEDA----ENVKMQLLVSSKVIGCV 409
Query: 533 IGKAGSKIKELREKTGARLKI 595
IGK+GS I E+R++T A + I
Sbjct: 410 IGKSGSVINEIRKRTNANICI 430
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 401 ETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTG 580
ET + L H GGS + EL ++L VIGK GS IK +RE +G
Sbjct: 284 ETAANPVPVFASSLPVTHGFGGSSRSE-ELVFKVLCPLCNIMRVIGKGGSTIKRIREASG 342
Query: 581 ARLKI 595
+ +++
Sbjct: 343 SCIEV 347
Score = 30.7 bits (66), Expect = 0.85
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 479 DQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
D+ + R+L G VIGK+G I +R T A++K+F + S+R++
Sbjct: 33 DELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVF-DQLHGCSQRVI 83
>At4g18375.1 68417.m02726 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 532
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 356 CPGPERVLSITA-EDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRAGCV 532
C E V+ +TA E + + + + + L E+ N + + + +++L+ GCV
Sbjct: 354 CGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDEDA----ENVKMQLLVSSKVIGCV 409
Query: 533 IGKAGSKIKELREKTGARLKI 595
IGK+GS I E+R++T A + I
Sbjct: 410 IGKSGSVINEIRKRTNANICI 430
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 401 ETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTG 580
ET + L H GGS + EL ++L VIGK GS IK +RE +G
Sbjct: 284 ETAANPVPVFASSLPVTHGFGGSSRSE-ELVFKVLCPLCNIMRVIGKGGSTIKRIREASG 342
Query: 581 ARLKI 595
+ +++
Sbjct: 343 SCIEV 347
Score = 30.7 bits (66), Expect = 0.85
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 479 DQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
D+ + R+L G VIGK+G I +R T A++K+F + S+R++
Sbjct: 33 DELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVF-DQLHGCSQRVI 83
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +2
Query: 344 TVPDCPGPERVLSITAEDDETLVE--IIKDIMPCLAEFHNQGGSRMGDQ----ELDVRML 505
T+ DC ER++++TA ++ K IM + +++ D + R++
Sbjct: 490 TLDDCE--ERLIAVTASENPECQSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLV 547
Query: 506 IHQSRAGCVIGKAGSKIKELREKTGARLKI 595
+ S+ GCV+GK G + E+R+ TGA ++I
Sbjct: 548 VPTSQIGCVLGKGGVIVSEMRKTTGAAIQI 577
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
R+L S G VIGK+G+ IK+L++ TGA++++
Sbjct: 50 RLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRV 82
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAP 613
R+L S AG VIGK G + +R++TG ++ I + P
Sbjct: 153 RLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIENLP 191
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 473 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
+G+Q++ ++L AG VIG G ++ L +TGA + + N+ ER++
Sbjct: 447 VGNQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINV-GNTLDDCEERLI 499
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +2
Query: 344 TVPDCPGPERVLSITAEDDETLVE--IIKDIMPCLAEFHNQGGSRMGDQ----ELDVRML 505
T+ DC ER++++TA ++ K IM + +++ D + R++
Sbjct: 490 TLDDCE--ERLIAVTASENPECQSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLV 547
Query: 506 IHQSRAGCVIGKAGSKIKELREKTGARLKI 595
+ S+ GCV+GK G + E+R+ TGA ++I
Sbjct: 548 VPTSQIGCVLGKGGVIVSEMRKTTGAAIQI 577
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
R+L S G VIGK+G+ IK+L++ TGA++++
Sbjct: 50 RLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRV 82
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAP 613
R+L S AG VIGK G + +R++TG ++ I + P
Sbjct: 153 RLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIENLP 191
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 473 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
+G+Q++ ++L AG VIG G ++ L +TGA + + N+ ER++
Sbjct: 447 VGNQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINV-GNTLDDCEERLI 499
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 461 GGSRMGDQELDVR--MLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAP 613
GG RMG Q + M I ++ G +IGK G IK ++ KTGAR+++ P
Sbjct: 219 GGRRMGGQAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLP 271
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 506 IHQSRAGCVIGKAGSKIKELREKTGARLKI 595
I R G +IGK G IK L+ ++GA++++
Sbjct: 140 IPNMRVGVIIGKGGETIKYLQLQSGAKIQV 169
>At2g03110.1 68415.m00264 KH domain-containing protein
Length = 155
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +2
Query: 476 GDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSER 628
G + VRML+ + G +IGK G I+ LR T A++++ +++ P +E+
Sbjct: 69 GQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCTEK 119
>At5g46190.1 68418.m05681 KH domain-containing protein strong
similarity to unknown protein (pir||T04533)
Length = 644
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/50 (32%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +2
Query: 479 DQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIF-SNSAPQSSE 625
+ ++ +++L+ GC+IGK+GS I E+R++T A + I N+ P+ ++
Sbjct: 396 EDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCAD 445
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 479 DQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSS 622
D + R+L+ S+ VIGK+GS IK +R +T A +K+ S S
Sbjct: 147 DDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPS 194
Score = 34.3 bits (75), Expect = 0.069
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
R+L G VIGK+G I +R++T AR+K+ + P SER++
Sbjct: 47 RILCPSGVMGSVIGKSGKVINLIRQETRARIKVV-DPFPGCSERVI 91
>At4g26000.1 68417.m03745 KH domain-containing protein
single-stranded nucleic acid-binding protein CBP -
mouse, PIR2:S78515
Length = 495
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
RM++ ++ G +IG+ G IK++ E+T AR+K+ + +RIV
Sbjct: 77 RMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPV-NTPDRIV 121
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 476 GDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIF--SNSAPQSSERIVQ 637
G Q R+ + S+ G +IGK G I+ L+ +GA+++I S + P S+ R V+
Sbjct: 172 GTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVE 227
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 494 VRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSA 610
+ + + + G +IG+ G IK ++ ++GAR ++ A
Sbjct: 274 IEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHA 312
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 467 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
S GD R + S AG +IGK G K++ +TG +L I + + + IV
Sbjct: 108 SNFGDSAT-ARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIV 162
>At5g09560.1 68418.m01107 KH domain-containing protein various
predicted RNA binding proteins, Arabidopsis thaliana
Length = 563
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQ 637
R+L + S+AG VIGK G +K+L + T + + + S RI++
Sbjct: 33 RILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIK 79
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Frame = +2
Query: 320 RSQYKASITV----PDCPGPERVLSITA--EDDETLVEIIKDIMPCLAEFHNQGGSRMGD 481
RS ASI+V PDC ER+++ITA + + E + ++ + + +++ D
Sbjct: 330 RSVTDASISVGDRHPDCD--ERLVTITAFEKTKDITSESQRALVLVFSNMYENATAKVLD 387
Query: 482 QELD----VRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFS 601
L R+++ ++ C++G+ G ++++TGA + + +
Sbjct: 388 SGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLN 431
>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
identical to acetyl-CoA carboxylase 1 (ACC1) [Arabidopsis
thaliana] GI:11869927
Length = 2247
Score = 31.5 bits (68), Expect = 0.49
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 359 PGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRM---GDQELDVRMLIHQSRAGC 529
P P RV + AED+ET VE+I + E H G RM G E +VR+ + S C
Sbjct: 1379 PFPRRV-EVNAEDEETTVEMI--LEEAAREIHRSVGVRMHRLGVCEWEVRLWLVSSGLAC 1435
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
++ + S AG +IGK G K++ +TGA+L I
Sbjct: 117 KISVDASLAGAIIGKGGIHSKQICRETGAKLSI 149
>At2g22600.1 68415.m02679 KH domain-containing protein
Length = 632
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 485 ELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARL 589
E +R++ H S G +IG G + +LR +TG ++
Sbjct: 24 ETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKI 58
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 464 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIV 634
G ++++ +++ AG +IGK G+ I+ L+ +TGA + + S ER+V
Sbjct: 269 GGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV-GAPLKVSGERVV 324
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 479 DQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKI 595
D+E +L +++ G V+G G ++ +R +GA +++
Sbjct: 137 DEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRV 175
>At1g62300.1 68414.m07028 WRKY family transcription factor similar
to putative DNA-binding protein GI:7268215 from
[Arabidopsis thaliana]
Length = 553
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +3
Query: 243 MKSPS*YLARWLGR*SEKVAAIYQSSEASTKPL*QSQIAPAPNGYSP*QLKMTKRSWKSL 422
M +P+ LAR + S +A I S+ T L + P PNG +P T + SL
Sbjct: 400 MMNPTNLLARAVLPCSTSMATISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSL 459
Query: 423 KISCRAWQNFITRVDPG 473
+ Q +T + PG
Sbjct: 460 MQRPQQQQQQMTNLPPG 476
>At1g80340.1 68414.m09405 gibberellin 3-beta-dioxygenase /
gibberellin 3 beta-hydroxylase (GA4H) nearly identical
to gibberellin 3 beta-hydroxylase GI:3982753 GB:AAC83647
[Arabidopsis thaliana]
Length = 347
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 350 PDCPGPERVLSITAEDDETLVEII 421
P CP P+R + + A D TL+ I+
Sbjct: 211 PKCPEPDRAMGLAAHTDSTLMTIL 234
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 497 RMLIHQSRAGCVIGKAGSKIKELREKTGARLKI--FSNSAPQSSERIVQ 637
R+ + S+ G +IGK G ++ L+ +GA+++I + + P S+ R V+
Sbjct: 235 RIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVE 283
>At1g80330.1 68414.m09404 gibberellin 3-beta-dioxygenase, putative /
gibberellin 3 beta-hydroxylase, putative similar to
gibberellin 3 beta-hydroxylase GA4H GB:AAC83647
[Arabidopsis thaliana], GA4 [GI:2160454]
Length = 355
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 350 PDCPGPERVLSITAEDDETLVEII 421
P CP PER + + A D T++ I+
Sbjct: 213 PVCPEPERAMGLAAHTDSTILTIL 236
>At1g03400.1 68414.m00320 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967); similar to
ESTs emb|Z34690, gb|T04168, gb|H37738, gb|T76913,
gb|T43801, amd gb|T21964
Length = 351
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 320 RSQYKASITVPDCPGPERVLSITAEDD-ETLVEIIKDIMPCLAEFHNQ 460
+SQY P CP P+ + I D L +++D + L FH Q
Sbjct: 200 KSQYMVGQHYPPCPQPDLTIGINKHTDISFLTVLLQDNVGGLQVFHEQ 247
>At1g15550.1 68414.m01870 gibberellin 3-beta-dioxygenase /
gibberellin 3 beta-hydroxylase (GA4) identical to
gibberellin 3 beta-hydroxylase [GI:2160454]
Length = 358
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 350 PDCPGPERVLSITAEDDETLVEII 421
P CP P+R + + A D TL+ I+
Sbjct: 218 PVCPEPDRAMGLAAHTDSTLLTIL 241
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,336
Number of Sequences: 28952
Number of extensions: 269332
Number of successful extensions: 671
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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