Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o05
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262...    27   2.5  
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389...    27   3.3  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    26   5.7  
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858...    26   7.6  

>05_06_0214 -
           26425100-26425922,26426008-26426058,26426183-26426256,
           26426344-26426441,26426547-26426671,26426724-26426957,
           26426992-26427037,26427101-26427152,26427331-26427367,
           26427521-26427637,26428287-26428352,26428439-26428518,
           26429102-26429311,26429650-26429739,26430093-26430182,
           26430280-26430411,26430876-26431094,26431203-26431286,
           26431543-26431656,26431857-26431914,26432535-26432602,
           26432847-26432962,26433495-26433574,26433839-26433912
          Length = 1045

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 GYVYHNKYIFLSTYNNMSNNIFQSQFI 278
           G V+ NKY++L TY+   N+ +   +I
Sbjct: 784 GRVFGNKYLYLGTYSEYKNSAYTLFYI 810


>06_03_0157 +
           17337641-17337896,17337975-17338082,17338643-17338908,
           17339933-17340021,17340095-17340198,17340403-17340508,
           17340600-17340675,17340772-17340883,17341719-17342250,
           17343097-17343131,17343924-17343984,17344054-17344132,
           17344266-17344349
          Length = 635

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 92  IIISKLTNFTGECLKGLKCDIFNINHLCNS 3
           I+ SKL+NF G    G   D  N N L NS
Sbjct: 281 IVSSKLSNFLGTSTSGSSSDSGNSNFLPNS 310


>08_01_0463 -
           4075037-4075316,4075997-4076151,4076818-4078861,
           4080757-4081589
          Length = 1103

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 84  DYYTVLMREDHIIFFKVTAANKHMPRFIYLCKLMTYHCGYVYHNKYIFL 230
           D  TV     H++  +V A   H  R  Y CK +  H G ++H +Y+ L
Sbjct: 581 DGITVESPSFHVL--RVLALENHFSRNYY-CKHILQHLGNLHHLRYLGL 626


>07_03_0446 -
           18285132-18285221,18285437-18285499,18285805-18285867,
           18286079-18286129,18286413-18286506,18286696-18286856,
           18287089-18287145,18287380-18287493,18287934-18287999,
           18288063-18288266,18289207-18289284,18289669-18289788,
           18290425-18290491,18290635-18290735,18290820-18290936,
           18292024-18292107,18292181-18292309,18292385-18292510,
           18292622-18292696,18292814-18292947,18293032-18293137,
           18293220-18293276,18294387-18294573,18295244-18295407,
           18296129-18296353,18296538-18296744,18297043-18297375,
           18297604-18297993
          Length = 1220

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 162 FIYLCKLMTYHCGYVYHNKYI 224
           F   CK  T HC  V+  KY+
Sbjct: 857 FFLWCKCCTIHCSLVHFKKYL 877


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,616,741
Number of Sequences: 37544
Number of extensions: 106607
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)