Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o05
         (321 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065792-1|BAC06011.1|  314|Homo sapiens seven transmembrane hel...    29   3.1  
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    29   4.1  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    28   7.2  
AB065523-1|BAC05771.1|  290|Homo sapiens seven transmembrane hel...    27   9.5  

>AB065792-1|BAC06011.1|  314|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 78  F*DYYTVLMREDHIIFFKVTAANKHMPRFIYLCKL 182
           F  Y T L+    +IF  +T  + H P +++LC L
Sbjct: 34  FISYVTALLGNSLLIFIILTKRSLHEPMYLFLCML 68


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 267 IEICYLTYYCRYLKIYICCDKHNRSDMSL-TYINI*IVAYVYL 142
           I IC   Y C Y   Y+C  KH  +   +  Y  I +  Y Y+
Sbjct: 25  IHICVHIYICMYTHRYMCTRKHMYTHKHMYVYTYIYVYTYTYV 67


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 149 TYATIYIFM*VNDISLRLCLSQQIYIFKYLQ*YVK*HISITVYL 280
           TY  +YIF     I + +CL   +YI+ Y+  Y+  ++ I +YL
Sbjct: 43  TYIYLYIF-----IYIYICLYIYLYIYLYIFTYIYIYLHIFIYL 81


>AB065523-1|BAC05771.1|  290|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 78  F*DYYTVLMREDHIIFFKVTAANKHMPRFIYLCKL 182
           F  Y    +    IIF  +T  + H P +++LC L
Sbjct: 34  FISYLVAFLGNSLIIFIIITECSLHEPMYLFLCML 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,335,315
Number of Sequences: 237096
Number of extensions: 677784
Number of successful extensions: 851
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)