Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6o05
         (321 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029124-1|ABJ17057.1|  286|Drosophila melanogaster IP15857p pro...    26   9.4  
AE014297-3717|AAF56398.2|  286|Drosophila melanogaster CG33096-P...    26   9.4  
AE014297-3716|AAF56399.2|  244|Drosophila melanogaster CG33096-P...    26   9.4  

>BT029124-1|ABJ17057.1|  286|Drosophila melanogaster IP15857p
           protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -2

Query: 143 CRRDLKEYYMVFSH*NCIIISKLTNFTGECLKGLKCDIFNINH 15
           C ++ K Y ++FSH N + + ++++F       + C+IF  ++
Sbjct: 85  CSKNAK-YTLLFSHGNAVDLGQMSSFYLTLGSQINCNIFGYDY 126


>AE014297-3717|AAF56398.2|  286|Drosophila melanogaster CG33096-PB,
           isoform B protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -2

Query: 143 CRRDLKEYYMVFSH*NCIIISKLTNFTGECLKGLKCDIFNINH 15
           C ++ K Y ++FSH N + + ++++F       + C+IF  ++
Sbjct: 85  CSKNAK-YTLLFSHGNAVDLGQMSSFYLTLGSQINCNIFGYDY 126


>AE014297-3716|AAF56399.2|  244|Drosophila melanogaster CG33096-PA,
           isoform A protein.
          Length = 244

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -2

Query: 143 CRRDLKEYYMVFSH*NCIIISKLTNFTGECLKGLKCDIFNINH 15
           C ++ K Y ++FSH N + + ++++F       + C+IF  ++
Sbjct: 85  CSKNAK-YTLLFSHGNAVDLGQMSSFYLTLGSQINCNIFGYDY 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,808,496
Number of Sequences: 53049
Number of extensions: 207159
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 674007744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)