Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n24
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.74 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.3  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   4.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.9  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   6.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 529  TTPLCGGRPVSSSWLLSFGSDPPPTANIICMF 434
            TTP+   +PV+++     G+D      ++C F
Sbjct: 2296 TTPMVPDKPVTTTTSRPIGTDTSDDYKVVCYF 2327


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 257 HTKQKFGLLNHGENYPYETYY 195
           H +  +   NH E YP  TYY
Sbjct: 73  HGQWNYSPDNHFEQYPNPTYY 93



 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 523 PLCGGRPVSSSWLLSFGSDPPP 458
           P     P+SSS + S  + PPP
Sbjct: 15  PQSAATPISSSGMTSPAAAPPP 36


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 574 TRSQKSWSCWIGSNVTTPLCGG 509
           T   + W+CW G+  T  LC G
Sbjct: 110 TSCTRYWTCWNGT-ATEQLCIG 130


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 227 HGENYPYETYYGYK*ITCAEFS*Q*QQNEYFSH 129
           H  NY YE  YGY   T +E +    Q  Y+ H
Sbjct: 38  HYSNYHYEDPYGY---TGSEETPPSPQEVYYHH 67


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 227 HGENYPYETYYGYK*ITCAEFS*Q*QQNEYFSH 129
           H  NY YE  YGY   T +E +    Q  Y+ H
Sbjct: 38  HYSNYHYEDPYGY---TGSEETPPSPQEVYYHH 67


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 227 HGENYPYETYYGYK*ITCAEFS*Q*QQNEYFSH 129
           H  NY YE  YGY   T +E +    Q  Y+ H
Sbjct: 38  HYSNYHYEDPYGY---TGSEETPPSPQEVYYHH 67


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 398 VMSSTRVRKRLYKHADDIGGRRRVTAEAQQPGGGHRSSTT 517
           V SS+ + + L     ++     V +    PG GH+ S T
Sbjct: 122 VTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRT 161


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 398 VMSSTRVRKRLYKHADDIGGRRRVTAEAQQPGGGHRSSTT 517
           V SS+ + + L     ++     V +    PG GH+ S T
Sbjct: 122 VTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRT 161


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 536 RTNPTRPRLLRASCHQCERFEVR 604
           R     P +LR SC QC   E++
Sbjct: 64  RLKSLAPLVLRGSCPQCTPQEMK 86


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 398 VMSSTRVRKRLYKHADDIGGRRRVTAEAQQPGGGHRSSTT 517
           V SS+ + + L     ++     V +    PG GH+ S T
Sbjct: 122 VTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRT 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,173
Number of Sequences: 336
Number of extensions: 4077
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)