Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n24
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   2.4  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    26   4.3  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    26   5.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   5.6  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   9.9  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   9.9  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 629  LVQCTQLSFELQTAHIDDNSLAEVVVVLDWFERNDPALW 513
            +V+C   +F  Q     DN      ++L+W E +DP +W
Sbjct: 1164 VVKCE--TFSTQGHKDKDNYFQNYQLLLNWLENSDPRVW 1200


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
 Frame = +2

Query: 302 NVHIV*DRPHTLCGT-----DHIPSIICAW*VLC 388
           N HI  D PH LC T     DHI S+ C W   C
Sbjct: 95  NGHISKDCPHVLCTTCGAIDDHI-SVRCPWTKKC 127


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 580 MTTRSQKSWSCWIGSNVTTPLCGGRPVSSSWLLSFGSDPPPTAN 449
           +T  SQ      +GS+ T  +     V++S LL+FG+  PP++N
Sbjct: 126 LTISSQVPLGAGLGSSATISVV----VATSLLLAFGNIEPPSSN 165


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 78   ATLEGPFSTIPPKIALSMRKIFILLLLLAEFSTSDLFVSIICFVWVIFSMVQKAELLF 251
            AT   PFS +  + A+    I    L++  F T  ++V+ + + WV    +  A  LF
Sbjct: 1494 ATARLPFSILYSRFAVPSIYIGARFLMMLLFGTMTVWVAHLIYWWVSIMALCVAPFLF 1551


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +2

Query: 320 DRPHTLCGTDHIPSIICAW*VLCEVLVMS---STRVRKRLYKHADDIGGRRRVTAEAQQP 490
           D P  LC   H P+ I    VLCE L+ S     +  K   K  D   G R     A  P
Sbjct: 347 DEPIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKSQPKDRDQNQGNR-----AYNP 401

Query: 491 GGGHRSSTTERGRYVRTNPT 550
              +++ +    R  +T PT
Sbjct: 402 PNRNQAFSARDSRQEKTQPT 421


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 666 FGGRGPRATSPGIGSMYAAEF 604
           +G  GP +  PG G  YA  F
Sbjct: 170 YGSTGPSSVDPGDGKHYATRF 190


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 185 ICIHNMFRMGNFLHGSEGRTFVSY 256
           +C+ ++ +    + GSE R FV Y
Sbjct: 118 VCLTSILKKAKIIPGSEARVFVGY 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,646
Number of Sequences: 5004
Number of extensions: 62650
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)