Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n24
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1048 + 8252404-8252517,8255799-8256266                           31   0.63 
02_05_0201 + 26687369-26689228                                         31   0.83 
03_06_0497 - 34332310-34334415                                         29   3.3  
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     28   7.7  
03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187           28   7.7  

>06_01_1048 + 8252404-8252517,8255799-8256266
          Length = 193

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 547 WIGSNVTTPLCGGRPVSSSWLLSFGSDPPPTANII 443
           WI S  T PLC  R +S  +  S G+ PPP A+++
Sbjct: 160 WIKSKSTCPLCRAR-ISPWFSGSIGAPPPPLADMV 193


>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 476 EAQQPGGGHRSSTTERGRYVRTNPTRPRLLRASCHQC 586
           E  +  G   ++TT+R   +RTNP RPR  R +C  C
Sbjct: 88  EPSEAAGSPTTTTTKRMYALRTNPGRPRNCR-TCENC 123


>03_06_0497 - 34332310-34334415
          Length = 701

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +3

Query: 33  GPRSQLRDRARISF*ATLEGPFSTIPPKIALSMRKIFILLLLLAEFSTSDLFV 191
           G R+Q  D A++    +   P  T+PP I L++  + +++LLLA  + + L V
Sbjct: 280 GGRAQDLDLAKLPRLPSPSKPKKTLPPLIILTILLLSVVILLLAAAAVAALVV 332


>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 203 FRMGNFLHGSEGRTFVSYVCHAG 271
           F  GNFL G EG+    YV H G
Sbjct: 246 FYTGNFLKGDEGKGGARYVKHGG 268


>03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187
          Length = 297

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 401 MSSTRVRKRLYKHADDIGGRRRVTAEAQQPGGG 499
           ++ST  R+RL       GG RR  A  ++P GG
Sbjct: 67  VASTTERRRLRTRRTGAGGGRRTGASRRRPSGG 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,073,006
Number of Sequences: 37544
Number of extensions: 437828
Number of successful extensions: 1243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)