Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n23
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    32   0.063
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    30   0.34 
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    28   1.4  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.2  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    25   7.3  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   7.3  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    25   7.3  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   9.6  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 254 ESCLLLQRTCRQDRNLAQSDVNICSRDPLLAND-SPLLTNMC 132
           E   L  +TC   R+L Q   NI   DPL+ ND  P L  +C
Sbjct: 258 EERFLFTKTCNVFRSLIQIQKNIMKEDPLIRNDYEPQLLPIC 299


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -2

Query: 498 SQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTPGRRRLSFAHRRHISTRY 322
           S T   +D R+ A   S+  +  P      +  E +RS H  G  R    +R H+S  +
Sbjct: 108 SSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHH 166


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 545 NAPDPHYHTKQTRSNAVRQNFPETNVRTPEGVQNALQQNPRLHNHMRT 402
           +AP P    K  +SN + Q++  T      G++  LQ NP  +  M T
Sbjct: 60  HAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMIT 107


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 602 FQGISDPQINSLRQLRRMDNAPDPHYHTKQTRSNAVRQNFPETNVRTPEGVQNALQQNP 426
           FQ  S PQ N L +  R  N+P    H     ++     FP +   T + + N+L  NP
Sbjct: 231 FQAASTPQFNPLIEHLRRSNSPLNPSH-DSAGASTFNTYFPNS---TYQNILNSLDNNP 285


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 456 RCSKRTAAKPPFT*SHENLESSRSGHTP 373
           RC+  TAAK PF  S  +L  +R GH+P
Sbjct: 221 RCALHTAAKDPFR-SKNSLRCNR-GHSP 246


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 504 QCSQTKLPRDQRAHARRCS-KRTAAKPPFT*SHENLESSRSGHTP 373
           Q S  K    QR H +  + +R +  PP+  + +NL SS S  TP
Sbjct: 308 QYSAAKQHVVQRRHTQGTNNRRQSTIPPYARTRQNLLSSPSKQTP 352


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -3

Query: 239 LQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNP 81
           LQR   Q  N A  D+N+  +  L A    + T      N +T + +    +P
Sbjct: 79  LQRESEQFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTREVILGRPSP 131


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -2

Query: 534 PPLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTP 373
           PP P +T   Q     + +D+     RC +      PF  S +N   SR    P
Sbjct: 56  PPTPAKTPKKQLLPNLMLQDRSNSLERCMEEDREHNPFLSSSDNQLLSRKKRKP 109


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 361 PPPAGSMPTPATFKVLM 411
           P P+G++P+PA F+ +M
Sbjct: 180 PLPSGNVPSPAEFQAMM 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,932
Number of Sequences: 5004
Number of extensions: 61882
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)