Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6n23
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0220 + 18276641-18276915,18278445-18278676 33 0.15
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855... 33 0.26
05_05_0057 + 21995018-21997006 29 2.5
02_05_0239 + 27101440-27101904 29 2.5
02_05_0201 + 26687369-26689228 29 2.5
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 3.3
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923... 29 3.3
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 29 3.3
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 29 4.3
07_01_1025 + 8861153-8861376,8861929-8863027 27 9.9
06_03_0595 - 22605177-22605536 27 9.9
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495... 27 9.9
>06_03_0220 + 18276641-18276915,18278445-18278676
Length = 168
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -2
Query: 594 HFRPSNKLIAPIAAHGQRARPPLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT* 415
H R P++ R PP P ++A+Q + R RA RR + ++PPF+
Sbjct: 45 HRRAHTPWCPPLSVADARM-PPRPPPSEAVQPAAAGRARAGRAQERR-ERSRCSRPPFSE 102
Query: 414 SHENLESSRSGHTP 373
+ L SRSG P
Sbjct: 103 ALPPLIPSRSGRRP 116
>06_03_0077 +
16284106-16284128,16284552-16284795,16285490-16285591,
16286347-16287057
Length = 359
Score = 32.7 bits (71), Expect = 0.26
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 531 PLPHQTDAIQCSQTKLPR---DQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTPGRRR 361
PLP A S+TK PR D A A R + TA + PF +H +E +G GRRR
Sbjct: 35 PLPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAG-DKGRRR 93
Query: 360 LS 355
S
Sbjct: 94 RS 95
>05_05_0057 + 21995018-21997006
Length = 662
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = -2
Query: 480 RDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTPG------RRRLSFAHRRHISTRYN 319
R A +RC+ +A+ F+ + L SSR + G RRR A R+ S RY+
Sbjct: 555 RGCNARMQRCNSNASARSSFSSNSGGLGSSRRSYVDGNGNVVKRRREECALERNRSARYS 614
Query: 318 QRHQ*N 301
H N
Sbjct: 615 PGHADN 620
>02_05_0239 + 27101440-27101904
Length = 154
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 568 CANCGAWTTRQTPITTPNRRDP 503
C C AW T Q+P T+P R P
Sbjct: 129 CPVCNAWVTTQSPGTSPPRTKP 150
>02_05_0201 + 26687369-26689228
Length = 619
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 361 PPPAGSMPTPATFKVLM*LCKRGFCC 438
PPP P P T++ +CK+GF C
Sbjct: 23 PPPPQPPPPPLTYRHHCKVCKKGFMC 48
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +2
Query: 524 GNGGLARCPCAAIGAMSLFEGLKCPEIHCVCWGHRCYE*F----CLCL 655
G GGLA PCAA G+ G +C V Y+ + CLC+
Sbjct: 50 GTGGLAASPCAADGSGETSGGQRCVFCEIVKGNKPAYKLYEDDVCLCI 97
>08_02_1330 +
26191062-26191314,26191894-26191961,26192125-26192355,
26192736-26192837,26192893-26192955,26193910-26193984
Length = 263
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 641 ITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNAPDPHYHTKQT-RSNAVRQNFPETNVR 465
+ R + VP++R G+ PQ+NS Q+ + + P+ K + V++ P N
Sbjct: 108 VMRKSSVPDLREKLSGVQRPQLNSTVQIPK--SVPEISTSAKPVQKREPVQKREPPVNAA 165
Query: 464 TP 459
P
Sbjct: 166 LP 167
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = -2
Query: 606 CISGHFRPSNKLIAPIAAHGQRARPPLPHQTDAIQCSQTKLPRDQRAHARRCSK 445
C++ H S+ +A + + AR L + + + D + H R C+K
Sbjct: 204 CLTAHATASDGKVAQLETELEVARDDLQKMKEIVASNDVAFQNDSKIHPRNCAK 257
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 447 KRTAAKPPFT*SHENLESSRSGHTPGRRRLSFAHRRHISTRYNQR 313
+R +AKPP + E+ + TPG RR + R Y+QR
Sbjct: 439 RRKSAKPPTHGDRYDDEAKMTSQTPGGRRRHSSRRNGSDDDYDQR 483
>07_01_1025 + 8861153-8861376,8861929-8863027
Length = 440
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 356 DNRRRPGVCPLLLLSRFSCDYVNGGFAAVRFEHLRACA 469
DN++ P LS+ +C ++ GF + HL CA
Sbjct: 11 DNQKPSSKNPGYFLSKHTCAWLASGFVLLALLHLLCCA 48
>06_03_0595 - 22605177-22605536
Length = 119
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 573 LIAPIAAHGQRARPPLPHQTDAIQCSQTKLPRDQRAHARRC 451
L+ P+ PPLP DA + T D+R + RRC
Sbjct: 7 LLLPLILSPCSPPPPLPPTADAGSAAGTPPMPDRRGNTRRC 47
>03_02_0014 +
4955759-4956106,4956229-4956277,4956372-4956579,
4956700-4956874,4956981-4957046,4957150-4957263,
4957366-4957482,4957589-4957715,4957826-4958112,
4958209-4958399,4958937-4959022,4959117-4959193,
4959330-4959473
Length = 662
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 133 AKDLTMKQKKQFVAAAIRPLTQIRLNT 53
AK + K KK F AAI PLT + ++T
Sbjct: 279 AKYIAKKNKKLFWVAAIAPLTSVIIST 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,250,585
Number of Sequences: 37544
Number of extensions: 485317
Number of successful extensions: 1399
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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