Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n23
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    32   0.41 
U13645-5|AAM15541.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.95 
U10438-6|AAA19087.1|  429|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    29   2.9  
Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      28   5.1  
U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U61955-9|AAC24409.3|  371|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL110498-2|CAB54468.1|  254|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
            C05C9.3 protein.
          Length = 1225

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -3

Query: 635  RNNDVPNIRNVFQGISDPQINSLRQLRRM-DNAPDPHYHTKQTRSNAVRQNFPETNVRTP 459
            R + +  ++N      + Q NS +Q  ++ +   + ++H +Q     V Q+FP  +V+  
Sbjct: 1082 RQDGMHQMQNQLHHHQNFQFNSGQQATQVHEQQQNQNHHVRQAVQEEVFQSFPRHDVQRH 1141

Query: 458  EGVQNALQQNPRLHNHMRTLK 396
               Q   QQN R H+  +  K
Sbjct: 1142 IHGQTNYQQNQRQHSQQQVYK 1162


>U13645-5|AAM15541.1|  425|Caenorhabditis elegans Hypothetical
           protein C05D10.1b protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -3

Query: 635 RNNDVPNIRNVFQGISDPQINSLRQLRRMDNAPDP--HYHTKQTRSNAVRQNFPETNVRT 462
           + ND   +  +F   SD Q+ +L  L +M+  P P   Y+ ++  SN +    P +++  
Sbjct: 62  QKNDTSVLSQLFPNASDQQLKTLLDLSKMNKLPPPVASYYQRKESSNPLVPPTPLSSIPN 121

Query: 461 PEGVQNALQQN 429
                NA+  N
Sbjct: 122 LITNSNAVSAN 132


>U10438-6|AAA19087.1|  429|Caenorhabditis elegans Hypothetical
           protein B0280.9 protein.
          Length = 429

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = -3

Query: 656 SDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRM-DNAPDPHYHTKQTRSNAVRQNFP 480
           +D    T    + N+ N+   +S    NS  QL  +  N  D H       S    +NFP
Sbjct: 329 NDCRNSTNPRPLFNVSNLVTAVSSIAFNSDAQLMAICSNVKDNHLRLVHVASQTTFKNFP 388

Query: 479 ETN 471
           E N
Sbjct: 389 ERN 391


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 536  LARCPCAAIGAMSLFEGLKCPEIHCVC 616
            L + PC   G + +FE +  PE+H +C
Sbjct: 927  LTKNPCIVAGDVRIFEAVDIPELHHMC 953


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 536  LARCPCAAIGAMSLFEGLKCPEIHCVC 616
            L + PC   G + +FE +  PE+H +C
Sbjct: 927  LTKNPCIVAGDVRIFEAVDIPELHHMC 953


>Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical
           protein F08G2.5 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 519 QTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESS 391
           ++  +  S++  PR +RA  +R SKR + KPP T S ++ + S
Sbjct: 59  RSSELPISESPAPRARRARKQR-SKRKSVKPPNTSSDDSSDDS 100


>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
           protein F26A3.8 protein.
          Length = 1601

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 536 LARCPCAAIGAMSLFEGLKCPEIHCVC 616
           L + PC   G + +FE +  PE+H +C
Sbjct: 900 LTKNPCIVPGDVRIFEAVDIPELHHMC 926


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 536 LARCPCAAIGAMSLFEGLKCPEIHCVC 616
           L + PC   G + +FE +  PE+H +C
Sbjct: 900 LTKNPCIVPGDVRIFEAVDIPELHHMC 926


>U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical
           protein W06B4.3 protein.
          Length = 962

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -3

Query: 650 INRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNA-PDPHYHTK-QTRSNAVRQNFPE 477
           + R+TR+ D      +   + + Q+  L ++RR+ N+ PDP +  K +  ++ V++ F  
Sbjct: 430 LERLTRHEDKIRRDALVMWLLNVQLEELAEMRRLKNSNPDPAFVEKLRDTTDHVQRYFMR 489

Query: 476 TNV 468
            NV
Sbjct: 490 KNV 492


>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
           protein F11E6.7 protein.
          Length = 1011

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 376 SRPAAVIFCSPPPH*YKIQSTPSIEPAEVIMCKVETPEKTSSP 248
           S PA  +     P    I +TPS+E  +  +   +TPE + SP
Sbjct: 777 SPPANEVIAQELPKASPISNTPSVESTQPALNVQKTPEASQSP 819


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 209  LAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNPAANPNSP 60
            L Q ++  C  DP    ++P  +     ++   ++  C GSNPA  P  P
Sbjct: 1017 LVQGEIAQC--DPFNPPNAPCPSEFTCQWSLSNQRYQCCGSNPAPTPQRP 1064


>U61955-9|AAC24409.3|  371|Caenorhabditis elegans Hypothetical
           protein M03D4.6 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +3

Query: 243 QTGLDVFSGV------STLHIITSAGSIDGVDCILY*CGGGEQKITAAGREYAHSCY 395
           ++G DVF  V      ++L     A  I  ++ ++Y CG  E + +    EY  +C+
Sbjct: 154 KSGSDVFGQVMPEILLNSLRSARKARKIKPMNIVIYLCGMSESRFSIVKEEYVRNCH 210


>AL110498-2|CAB54468.1|  254|Caenorhabditis elegans Hypothetical
           protein Y64G10A.3 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -2

Query: 615 HTQCISGHF---RPSNKLIAPIAAHGQRARPPLPHQTDAIQCSQTKLPRDQRAHARRCSK 445
           HT+ ++ HF   RPSNK++   A+   ++   LP +T      +T+L R +  H+R C  
Sbjct: 137 HTKFVA-HFLANRPSNKILGIAASKVCKSEEELPRET------RTELARLRCGHSRLCGA 189

Query: 444 RTA 436
             A
Sbjct: 190 YVA 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,459,965
Number of Sequences: 27780
Number of extensions: 385952
Number of successful extensions: 1233
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)