Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n19
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   2.0  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    25   6.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    24   8.0  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 15  KFWIKHAHCCRSH 53
           +F ++H HCCR H
Sbjct: 64  RFIVRHIHCCRCH 76


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 358 VVSTCKIFNLEFVHTLK 308
           +++TCK F +E  HT K
Sbjct: 121 IIATCKSFGIEKAHTTK 137


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 76  CKSVKNIICDLQQCACFIQ 20
           CK  K  +CD QQ AC  Q
Sbjct: 346 CKLTKGSLCDDQQDACCYQ 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,340
Number of Sequences: 5004
Number of extensions: 19519
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)