Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n19
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    29   1.4  
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    29   1.9  
04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947     28   3.3  
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153...    27   4.4  

>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 188 PFLYFPSQVSFLLLDILLMHCPYASLA 108
           PF   P   SF+L   L+M CPY S++
Sbjct: 739 PFYATPMACSFVLRTCLVMECPYGSVS 765


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 98  RKEMQG*HRDNALAEYLIAKKRLDLENKEKEIV 196
           +KE  G  +   L E  IAKK+L+L+ K+ E++
Sbjct: 283 KKEQSGFLKKMTLCEKSIAKKKLELDKKQPELL 315


>04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947
          Length = 417

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 118 LALHFFSSILFPLGCKSVKNI-ICDLQQCACFIQNF 14
           LAL FF+ ++  +G  S+ N+ +C L  CAC+++ F
Sbjct: 344 LALPFFADLMALVG--SMLNVAVCMLLPCACYVRIF 377


>08_02_0433 -
           17114880-17114972,17115053-17115149,17115244-17115306,
           17115765-17115918,17115992-17116178,17116567-17116871,
           17117638-17117803,17118261-17118652,17119032-17119208,
           17119565-17119604,17119762-17119809,17122393-17122428,
           17122832-17123104
          Length = 676

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 305 FFKCMYKF*IKYLACT-NYHVIIILENIK*SNY 400
           F++C Y F + YL  T + H ++ L N+K   Y
Sbjct: 213 FYECCYAFVVSYLLATIHSHGLLNLNNVKVPEY 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,641,417
Number of Sequences: 37544
Number of extensions: 105304
Number of successful extensions: 251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)