Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n19
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cycl...    27   4.0  
Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical pr...    26   9.2  
Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    26   9.2  

>AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cyclase
           protein 2 protein.
          Length = 1080

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 182 LYFPSQVSFLLLDILLMHCPYASLAFLFF 96
           ++ PS VS L+   +L   PY+   FLFF
Sbjct: 708 IFLPSCVSHLVSVFILYRLPYSHRCFLFF 736


>Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical
           protein W06G6.3 protein.
          Length = 318

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 30  HAHCCRSHIIFLTLLQ 77
           H  C  SH+IFL+LLQ
Sbjct: 81  HQFCFSSHVIFLSLLQ 96


>Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical
           protein C30H6.2 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 276 VGNNNFMLDSFLSVCTNSKLNILHVLT 356
           +G+   ++DS LS+CT   LN+L  LT
Sbjct: 279 IGDLAVLIDSGLSMCTALILNLLSALT 305


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 59   IFNTFTAKRKQDGRKE 106
            IFN     RKQDGRKE
Sbjct: 2758 IFNEIVEMRKQDGRKE 2773


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,239,315
Number of Sequences: 27780
Number of extensions: 108319
Number of successful extensions: 287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)