Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n19
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   2.4  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    21   5.4  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   5.4  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    20   9.5  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 60  FLTLLQPSGNKMEEKKCKASI 122
           F   LQP  N +E+K  K+S+
Sbjct: 531 FPITLQPGKNTIEQKSTKSSV 551


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 21  WIKHAHCCRSHIIFLTLLQPSG 86
           W K    C SHII + L    G
Sbjct: 46  WFKAIGTCGSHIIIVGLFYEFG 67


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -2

Query: 145 IFC*CIVPMLALHFFSSILFPLGCKSVKNIICD 47
           ++C CI+    +   +++  P G K+V  ++ D
Sbjct: 61  LYCECILKNFNILDKNNVFKPQGIKAVMELLID 93


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 285 NNFMLDSFLSVCTNSKLNILHVLTTM*LSFW 377
           N F    +LSVC    L +   LT   +  W
Sbjct: 25  NKFKTTRYLSVCERLNLALSLSLTETQVKIW 55


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 70  FYSQAETRWKKRNAR 114
           ++     +WKK NAR
Sbjct: 55  WFQNRRMKWKKENAR 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,064
Number of Sequences: 438
Number of extensions: 1414
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)